GT6679

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small/tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT6679

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 18457473 [Map]; Strand: c
  - AT4G39770.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Distance: -6180; Region: intergenic
  - AT4G39780.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
    Distance: 484; Region: intergenic
Flanking Genome Sequence: GT6679 - 3-prime edge
```
AAGTAGTTGT ATAGTGTATA TATTATGAAC GTTTTAATCT TTGCCACAAT 
TGTTGGTTAT TGTAAAATTC TTTACCTTAA AGCATCGAAC TTTGTGGCTT 
ATGTGTTCCC ATATGTCAAC AACGGACCTC TATCGTCCAC AATACACACA 
AATGCAGCAT AAGTTATTTG AATTATCGCC GGAATAAAG
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 10377136 [Map]; Strand: w
- AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)
Chromosome: 3; Position: 22769065 [Map]; Strand: c
- AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)

GGTCGAACAG TCTTGTGAAC CAAATCAGAT CACAATGGAG ATTCTAATGG 
AGCGTCTCTC AGGTTCTGAT GAGTTAGTTA AGCTGAGGAA GTTTATGCAA 
GGCTACTCTG TTGCTTCGCC GACCGAGAAA GCTTCACCTT TCGATGTCTT 
TAGCTTGGGA TAATGTTCGT TTAGATACAG TAACCATTAC TATAATGTGT 
TTAATAATTT CTTGATTCTG CATTTTATAT AATTACACAA TCGCTATTTA 
TTTATGTATG GTTATTTGCT AAATTTTGTT AAAATAAAAA ATCCAGCTTT 
CTACAATTCT CAATGCAGTA ACTTAAGTAA GCCCATTTAC TTATGGGCCT 
CGTGTATTTG AGGTCCCCGA GACTTGGACA GACACGTGTC TTGAATTGAA 
TGGTTCTTCT CT

AT3G61520.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39770.1

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G22190.1); Has 2411 Blast hits to 2406 proteins in 857 species: Archae - 41; Bacteria - 1356; Metazoa - 219; Fungi - 156; Plants - 489; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39780.1

Model type: Protein coding
Short Description: Integrase-type DNA-binding superfamily protein
Curator Summary: encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description: Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G22200.1); Has 5858 Blast hits to 5712 proteins in 253 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5812; Viruses - 11; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28460.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR