GT6699

CSHL Arabidopsis genetrap mutant lines

Original: GT6699

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6699

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7915673 [Map]; Strand: w
      • AT1G22410.1 - [+] show detail - Class-II DAHP synthetase family protein
        Distance: 670; Region: intergenic
      • AT1G22420.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 403; Region: intergenic
    Flanking Genome Sequence: GT6699 - 3-prime edge 
    AANAGCCGAC CGTTACCGAC CGTCAAACAT AACCAGATGA TCTGCAGAAT 
    CCTCCTGATC CAAACCAACA GAGAATAATC GTAAGTTGAA TCATACATTT 
    ATAATAGCAA AAAGGCAACC TTCAGACAGA AACTCCACAG AGGTTGCATG 
    ATCAAAGTGA TATCCTTGTA GGACGACTCT TCGCCTAGCT AGTGTGTTTA 
    ACAAGCAATG GCAGCATCAA AAGCCTGATC ATACACACAC AAACACATAT 
    AACAACAACA ACATTCATNT CCNTGNAAAC ATAATAGAAG CAAAGCTGGA 
    TCTTAATGAG TAGTTTTATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7915750 [Map]; Strand: w
      • AT1G22410.1 - [+] show detail - Class-II DAHP synthetase family protein
        Distance: 747; Region: intergenic
      • AT1G22420.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 326; Region: intergenic
    Flanking Genome Sequence: GT6699 - 5-prime edge 
    CCTNTNGAGT NTTAATGTAT GATTCATTTA TAACATTTTG CGATTTTTCA 
    TGTGATTTAG AGAGAAAAAA ACATTTCACA TTGTTAAACG TTATTTTGTT 
    TTCTCTGCTT TGAAAGGTAA ATAGTTGACC TGACCGGTTA TGAAATCAAT 
    GTACTTCAAA GAAAGAAAGA AAAAAGAGAG AGAGCTTTGG TGGGGCTTGC 
    TANATTTTTC AAAGTACACC AGATAAAATA GCAATGATCA CAAANAANTT 
    GTCACATAGA AAAACGAAGA TACACAACAG AAACAAGAAA CAAAAGATAC 
    AGAAACAGAA ACCAAAAACA CCAACGATAG AAGGAAAAAG AAACACTNTT 
    TCAGGTTTGG AAGGAGCCCG GCATATAGGT TGGANACNAC AGGAAGATCA 
    GGTNAGGTAT ATTGATCGGT GAAAAGGCCA CTCTAAATTC CCTAACGGAN 
    AANTCACCGG AACTGGTGGT GGAGTGTTCT GAAAATTGGG CAAATCTACA 
    CTCATTAACG GTAAAGTCTC TGGAACCAAT GGTGGAACGT TCTCTGGTTG 
    TANATTATTC TGAGGATTTG GCAAGTCTAA CGGTAAATTC TCCGGAACTA 
    GTGGTGGAAC GTTCTCTAGT TGTACATANT TCTCTANTTG ATTTGGTGTC 
    CAATCTAACG GCGAATCACC GGTANAACGT TATCTGGTTG TTAAATTGTT 
    TTGAAGGATT TGGCCANTCT AACGAAGGAA NTCNCCAN

AT1G22410.1

Model type
Protein coding
Short Description
Class-II DAHP synthetase family protein
Computational Description
Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22420.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 5656 Blast hits to 3947 proteins in 438 species: Archae - 16; Bacteria - 438; Metazoa - 2628; Fungi - 766; Plants - 800; Viruses - 196; Other Eukaryotes - 812 (source: NCBI BLink).
Link
InterPro Scan - TAIR