GT6703

CSHL Arabidopsis genetrap mutant lines

Original: GT6703

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6703

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 534541 [Map]; Strand: c
      • AT1G02530.1 - [+] show detail - P-glycoprotein 12
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: GT6703 - 3-prime edge 
    CCGACCGTTA CCGACCGTTT TCATCCCTAG CTTCACATGA CTGCTTCTAA 
    TTGATAATGA TATAATGTTT TGTTTACGAT AGCAAAAATA TATTTATGTT 
    GTTGTATGCA AGTTTATGTA GCTGTCACTA TTTATTTTCT TTCCCTTTCT 
    CTCTAAATTT ATAGTTATAA AATGAATGTC TTTATTTGAC TTTTTGCTCT 
    AAACCATCGT CTCCACTACC AAATACAGAG ATAATATGTA CAAACACACT 
    CAAACAACGA AAAATAACGA GCACTCAACA TTGCTTTCTT CTTTTTATCA 
    TCTGCTCTTT CCCTGCACCA TACCAAGATA AATCTTTATT AATTGACCCC 
    ATTAATGACA GGTGGTTCTT GCATCTCGTG CCCATGGGTA TTAAACACGA 
    GCCCAAAAGG ATTGTTGTTG GTCACCATGT TGTCCCATGG AGACATCTCT 
    TGACCTCCTG CGAAATAAGA NTCTTGAAAG TGGANGTTCC TCTGCGTCTT 
    CAATCCTGCG AAACATATCT CAGTAAACGT TTTCAGCTTC CTCTCTTCTT 
    CTTCTTGTTT AACCAGATCA AAGATCATAT CTTGGTCAAC ACGTTCATCT 
    TCCATGATTA CAACAAGCGG GTTCCCTGAA TCTTGACTTT GAACCGGAAN 
    ANGAATCTGT GAATCTTGTT GTTGAATGCC CCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7915763 [Map]; Strand: w
      • AT1G22410.1 - [+] show detail - Class-II DAHP synthetase family protein
        Distance: 760; Region: intergenic
      • AT1G22420.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 313; Region: intergenic
    Flanking Genome Sequence: GT6703 - 5-prime edge 
    AATGTATGAT TCANTTATAA CATTTTGCGA TTTTTCATGT GATTTAGAGA 
    GAAANAAACA TTTCACATTG TTAAACGTTA TTTTGTTTTC TCTGCTTTGA 
    AAGGTAAATA GTTGACCTGA CCGGTTATGA AATCAATGTA CTTCAAAGAA 
    AGAAAGAAAA AAGAGAGAGA GCTTTGGTGG GGCTTGCTAC ATTTTTCAAA 
    GTACACCAGA TAAAATANCA ATGATCACNA ANAAGTTGTC NCATAAAANA 
    ACGAANATAC NCAACANAAA CTAGAAACAA AAGATACAGA AACAGAANCC 
    AANANCNCCA ACGATAGANG GAAAAANAAA CNCTATTTCA GGTTTGGAAG 
    GAGCCCGGCA TNNAGGTTGG AGACNACAGG AAGATCNGGT NAGGTATATT 
    GATCGGTGAA AAGGCCACTC TAGATTCCCT AACGGANAAT CACCGGAACT 
    GGTGGTGGAN TGTTCTGAAA ATTGGGCAAA TCTACNCTCA TTAACGGTAA 
    AGTCTCTGGA ACCANTGGTG GAACGTTCTC TGGTTGTAGA TTATTCTGAG 
    GATTTGGCAA NTCTAACGGT ANATTCCCCG GAACTAGTGG TGGAACGTTC 
    TCTANTTGTA CATAGTTCTC TAGTTGATTT GGTGTCCANT CNANCGGCNA 
    AAGTCCCGGT ANAAACGTTT NCCTGGTTGT NNATTGTTTT TGAGGATTTG 
    GGCCNCTCTA ACCCAAGGAA NTTCCNCCCC TT

AT1G02530.1

Model type
Protein coding
Short Description
P-glycoprotein 12
Computational Description
P-glycoprotein 12 (PGP12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 834511 Blast hits to 387558 proteins in 4042 species: Archae - 14726; Bacteria - 649276; Metazoa - 18491; Fungi - 13092; Plants - 9791; Viruses - 35; Other Eukaryotes - 129100 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22410.1

Model type
Protein coding
Short Description
Class-II DAHP synthetase family protein
Computational Description
Class-II DAHP synthetase family protein; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (TAIR:AT4G39980.1); Has 3811 Blast hits to 3796 proteins in 685 species: Archae - 0; Bacteria - 1237; Metazoa - 0; Fungi - 110; Plants - 171; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22420.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 5656 Blast hits to 3947 proteins in 438 species: Archae - 16; Bacteria - 438; Metazoa - 2628; Fungi - 766; Plants - 800; Viruses - 196; Other Eukaryotes - 812 (source: NCBI BLink).
Link
InterPro Scan - TAIR