GT6894

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT6894

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 4595127 [Map]; Strand: c
- AT3G13920.1 - [+] show detail - eukaryotic translation initiation factor 4A1
  Distance: -165; Region: promoter
- AT3G13920.2 - [+] show detail - eukaryotic translation initiation factor 4A1
  Distance: -165; Region: promoter
- AT3G13920.3 - [+] show detail - eukaryotic translation initiation factor 4A1
  Distance: -208; Region: promoter
- AT3G13920.4 - [+] show detail - eukaryotic translation initiation factor 4A1
  Distance: -128; Region: promoter
- AT3G13930.1 - [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
  Distance: -749; Region: promoter

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATTG TCTTAACTTG 
ATTTTGGCAA AAATAAATAA ACAAATATCT AGTGGGAAAT TAGGAACATA 
AATTCTTCAT TTATTTTTTT TTCTTTTCCA AAGCTTTCTT TCTCCTGCAA 
CTTTTATTGC TTTTTGACGT TACAAAGCAT TTTCCCGATT ACAACGAGGA 
TATTAGAAGA ATAAAGTGAC TGATAAGAAC GTTTTATCTG AAAATGTCTT 
TACTTATTAA CACATCTATC TCTCTATGTT GAATGTTTAA TCATGTAATT 
GTTCCACAAG TGATATGAAG AATCCTTGAA ACGAAGCAAA ACACATTGAG 
TAAGAAGAAG GTAACTAGCT AGTATGAAGA AGCAGCAAGT TGCTATCTAT 
CTTCAACAAA AAATGCTTTG ATTTTAGCCT CAAGAGACTT TCTTAGAATC 
TGTTGCCATT GAAGAAAAAG CTGGAGAGGG CAAAACATAA TCATGATGCT 
TAGGATAAGC AAAAAATATG TATTTAGCTT GTGTAGGTAG AGGAAGAGCT 
AGGAGTTTTT TTGTGTGACA GGAATCGAGG GAAAACGATG GGCCAAAGAT 
TAGGCCCATT AATAAGTTTG ACTAATCCCT G

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 4595004 [Map]; Strand: c
  - AT3G13920.1 - [+] show detail - eukaryotic translation initiation factor 4A1
    Distance: -42; Region: promoter
  - AT3G13920.2 - [+] show detail - eukaryotic translation initiation factor 4A1
    Distance: -42; Region: promoter
  - AT3G13920.3 - [+] show detail - eukaryotic translation initiation factor 4A1
    Distance: -85; Region: promoter
  - AT3G13920.4 - [+] show detail - eukaryotic translation initiation factor 4A1
    Distance: -5; Region: promoter
  - AT3G13930.1 - [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
    Distance: -872; Region: promoter
Flanking Genome Sequence: GT6894 - 5-prime edge
```
AGCTAAGTGT TGGAAAACCT TGTCCGAGCC AAAAGAGTAA AAAGAAAGGG 
AATAAAGGGG TAAAACCGGA AATCCGAAAA AGAAAAGGAG AAGATTTCCA 
AAGGAGAAAA CCCTAAAGAC GGAGTATATA AACTAGGTAA CGCGTTTTCT 
CTCAGCCTCT TTCGGATATT CCACCAGTCT CTCGCAATCT TCGCTCTTCT 
CTTTGCTCTC TCTCTCTCAA CGCGGTTCAT ATCCGAGTTT GGGAGATTCA 
AGCTCCCTGA AAAAAGCCCT TTACTCTCGC TTACCAACTT TGCTCCAGGT 
TCGATTCCTA TCGGATTGTC TATCTATTAT CTCGATGTAA CTTTTACGAT 
TCATGATTGG TTCTTTACTT T
```

AT3G13920.1

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 4A1
Curator Summary: eukaryotic translation initiation factor 4A-1
Computational Description: eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49714 Blast hits to 49117 proteins in 3142 species: Archae - 779; Bacteria - 27442; Metazoa - 6117; Fungi - 4773; Plants - 2624; Viruses - 17; Other Eukaryotes - 7962 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G13920.2

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 4A1
Curator Summary: eukaryotic translation initiation factor 4A-1
Computational Description: eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G13920.3

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 4A1
Curator Summary: eukaryotic translation initiation factor 4A-1
Computational Description: eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49587 Blast hits to 48995 proteins in 3133 species: Archae - 779; Bacteria - 27305; Metazoa - 6121; Fungi - 4627; Plants - 2620; Viruses - 17; Other Eukaryotes - 8118 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G13920.4

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 4A1
Curator Summary: eukaryotic translation initiation factor 4A-1
Computational Description: eukaryotic translation initiation factor 4A1 (EIF4A1); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.2).
Link: InterPro Scan - TAIR

AT3G13930.1

Model type: Protein coding
Short Description: Dihydrolipoamide acetyltransferase, long form protein
Computational Description: Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, copper ion binding; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT1G54220.2); Has 21425 Blast hits to 19790 proteins in 2331 species: Archae - 106; Bacteria - 12026; Metazoa - 730; Fungi - 474; Plants - 369; Viruses - 0; Other Eukaryotes - 7720 (source: NCBI BLink).
Link: InterPro Scan - TAIR