GT6928

CSHL Arabidopsis genetrap mutant lines

Original: GT6928

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6928

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4520765 [Map]; Strand: c
      • AT5G14000.1 - [+] show detail - NAC domain containing protein 84
        Distance: 1465; Region: intergenic
      • AT5G14010.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -1384; Region: intergenic
    Flanking Genome Sequence: GT6928 - 3-prime edge 
    GTTCAATTTC AAGCAAACGG TTCTTATTTT GGCTAACCAC TTGGTTTTGG 
    TAAACAGATT TGGATCTCTA AATTATAATA TATAAACATT CAT

AT5G14000.1

Model type
Protein coding
Short Description
NAC domain containing protein 84
Computational Description
NAC domain containing protein 84 (NAC084); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 83 (TAIR:AT5G13180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14010.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Encodes KNUCKLES (KNU), a C2H2-type zinc finger protein with a conserved transcriptional repression motif. Mediates the repression of WUS in floral meristem determinacy control.
Computational Description
KNUCKLES (KNU); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: floral meristem determinacy, regulation of transcription, regulation of flower development; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 4 (TAIR:AT1G66140.1); Has 934 Blast hits to 934 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR