GT6960

CSHL Arabidopsis genetrap mutant lines

Original: GT6960

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6960

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8353928 [Map]; Strand: w
      • AT3G23340.1 - [+] show detail - casein kinase I-like 10
        Distance: 0; Region: exon14 (3UTR)
      • AT3G23350.1 - [+] show detail - ENTH/VHS family protein
        Distance: -176; Region: promoter
    Flanking Genome Sequence: GT6960 - 3-prime edge 
    TATTAATAGA TTTCAAGCAT TTGACCAAAT TTGAACTAAT ATAAACAAAG 
    TACTTGGGTT ACAAGTTACA TATACCACTT TATAAAATTC TATGAAGAAC 
    TATAAACACA TAAAGGGGGA GACAGTTTTA CATTGGTTAC ACATTTTCAG 
    ATTCTTCCAA ACT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT6960 - 5-prime edge 
    CTTACTAATG GATGGGCCTA TTCATTTACC

AT3G23340.1

Model type
Protein coding
Short Description
casein kinase I-like 10
Computational Description
casein kinase I-like 10 (ckl10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I (TAIR:AT4G14340.1); Has 56550 Blast hits to 56234 proteins in 2232 species: Archae - 39; Bacteria - 9117; Metazoa - 21673; Fungi - 6267; Plants - 8804; Viruses - 331; Other Eukaryotes - 10319 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23350.1

Model type
Protein coding
Short Description
ENTH/VHS family protein
Computational Description
ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G46540.1); Has 1024 Blast hits to 1024 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 200; Plants - 173; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR