GT7088

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT7088

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 19719730 [Map]; Strand: c
- AT5G48620.1 - [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
  Distance: 0; Region: exon4 (CDS)

CCCTAGTCAC TGACTTCAAA AACTATGTTT ATCTAAAGCC AAGGATGAGA 
ACTTCCTACA AATCGTCAAA GTCCCTATAT CCACCTATAC CATTAATGCT 
CAACCTCCTA GTAGATCTCG TAGACTTTCT GTGCATAGTC GTAATGCACT 
TCACATATTG ATACATGGAA AAAGTTCAAA AAACAAATTA GATCTCTTTG 
CGTATACAAT CAGTTCCAGA CTTGGGGAGT TTGGCGTTGC TAAGATTATT 
AGATCTAAAA GGAGTAAAAG TTTCAAGGAG CCAAGTTACC TTCCAGCATC 
CACTTGAGAT TCTTGAACTT ATACGAGGCT TGGGTATGTC ATCTTTC

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 8957860 [Map]; Strand: w
  - AT1G25500.1 - [+] show detail - Plasma-membrane choline transporter family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G25500.2 - [+] show detail - Plasma-membrane choline transporter family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT1G25500.3 - [+] show detail - Plasma-membrane choline transporter family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: GT7088 - 5-prime edge
```
CTCATGATGG AGTAAGAAGA GAAGATTCAC TCACTGACCA AAACCAAATT 
TCATGGAACC ATCTTTGAAT AGATATCACA AGAGTTGAGA GAGAGAGAAG 
TGAGGGAGAA TAGTCAATGA GAGGAAAAGT ATAAGGGGCG TGAATCAAAG 
AAGAAATATG AAAAACGATG AGAGAAGAGA GTGAGGCAAA NAAGTTTTGT 
CAGAGCGGTT CTTCTTCTTC TTCGTCTTCT TCCTTTTTAT TGGATAAGCA 
GTGGGCGTTT TCAGATCACA CTTTCTCCCT CCGTAACTAT TGACGTGTTT 
TTCTTTTTAA TTTTCCTATC ACAAAATTAT TTCTTTTCTT TTTTGGGTCG 
TTGCTTTATT TCT
```

AT1G25500.1

Model type: Protein coding
Short Description: Plasma-membrane choline transporter family protein
Computational Description: Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25500.2

Model type: Protein coding
Short Description: Plasma-membrane choline transporter family protein
Computational Description: Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 973 Blast hits to 970 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 169; Plants - 182; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25500.3

Model type: Protein coding
Short Description: Plasma-membrane choline transporter family protein
Computational Description: Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G48620.1

Model type: Protein coding
Short Description: Disease resistance protein (CC-NBS-LRR class) family
Computational Description: Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR