GT7105

CSHL Arabidopsis genetrap mutant lines

Original: GT7105

Phenotypes

Morphological phenotypes

Original description

  • small, shoot meristem-less plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT7105

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18233346 [Map]; Strand: w
      • AT4G39140.5 - [+] show detail - RING/U-box superfamily protein
        Distance: -1335; Region: intergenic
      • AT4G39150.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
        Distance: 139; Region: intergenic
    Flanking Genome Sequence: GT7105 - 3-prime edge
    TTATAAATTG GTCCCTCTAT AATTGTTAAT TTATAAAACT GGAATCTAAT 
    TTTTTAATTT CTAACGGCCC CTCTACGCGT CCTGCGGAAA TTGCCGGTTA
    ATTATTCGTT CTCCCTCTCT TTTTGTCCTT TAACGTGACG TGGCACTACT
    CACCGTAAAG TCACTATAAC TCCGCTAACT CTAACGGCGT CACATCTAAA
    CCGGCTTATC TTGGGTTATT TTACACAAAC CGGCTTATCT TGGTTCGATC
    ATGGCAAAAC TGTTCTTTGA TTTTCTTTTA AATCTTTCAT ATAGGCTAAT
    TCTTTCCCAC AACTTGACAC ATTAGCACAT GAAAGCTTGT CACCTAAACT
    TCATAAGATA AAAATACATA ATTAGTAATT AATTCAACAT AACAACTAAA
    ACAGGAGGAT ATAATTAATC AGAACTTGAA CCATCACTCA TTCTACATTT
    TTTTAATTCA ATGTATCCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18233576 [Map]; Strand: w
      • AT4G39150.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
        Distance: 0; Region: exon10 (3UTR)
      • AT4G39150.2 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
        Distance: 0; Region: exon10 (3UTR)
    Flanking Genome Sequence: GT7105 - 5-prime edge
    AAAGACGAAA CCATCACTTC CCATAACAAT ATTTATTTAG TGTGGAATAT 
    AAATACGAAT AAAACAATAT TAATCGTTAC AATACATTCA AGAATTCTCA
    CAAAACCTGA TTGTTCTGTT TCGAACCGGT GGATTCGAAC CTTGGTTTAA
    GGTGCCGGCT TCGAGGAATC TCCGGTGTGG ACTTTCACTC CT

AT4G39140.5

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39150.1

Model type
Protein coding
Short Description
DNAJ heat shock N-terminal domain-containing protein
Computational Description
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1); Has 22737 Blast hits to 22610 proteins in 3244 species: Archae - 169; Bacteria - 9228; Metazoa - 3910; Fungi - 2127; Plants - 2302; Viruses - 18; Other Eukaryotes - 4983 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39150.2

Model type
Protein coding
Short Description
DNAJ heat shock N-terminal domain-containing protein
Computational Description
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1).
Link
InterPro Scan - TAIR