GT7105

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small, shoot meristem-less plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)
seedling (PO:0008037)	lethal (sensu genetics) (PATO:0000718)

Original: GT7105

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 18233346 [Map]; Strand: w
- AT4G39140.5 - [+] show detail - RING/U-box superfamily protein
  Distance: -1335; Region: intergenic
- AT4G39150.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
  Distance: 139; Region: intergenic

TTATAAATTG GTCCCTCTAT AATTGTTAAT TTATAAAACT GGAATCTAAT 
TTTTTAATTT CTAACGGCCC CTCTACGCGT CCTGCGGAAA TTGCCGGTTA 
ATTATTCGTT CTCCCTCTCT TTTTGTCCTT TAACGTGACG TGGCACTACT 
CACCGTAAAG TCACTATAAC TCCGCTAACT CTAACGGCGT CACATCTAAA 
CCGGCTTATC TTGGGTTATT TTACACAAAC CGGCTTATCT TGGTTCGATC 
ATGGCAAAAC TGTTCTTTGA TTTTCTTTTA AATCTTTCAT ATAGGCTAAT 
TCTTTCCCAC AACTTGACAC ATTAGCACAT GAAAGCTTGT CACCTAAACT 
TCATAAGATA AAAATACATA ATTAGTAATT AATTCAACAT AACAACTAAA 
ACAGGAGGAT ATAATTAATC AGAACTTGAA CCATCACTCA TTCTACATTT 
TTTTAATTCA ATGTATCCT

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 18233576 [Map]; Strand: w
  - AT4G39150.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
    Distance: 0; Region: exon10 (3UTR)
  - AT4G39150.2 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
    Distance: 0; Region: exon10 (3UTR)
Flanking Genome Sequence: GT7105 - 5-prime edge
```
AAAGACGAAA CCATCACTTC CCATAACAAT ATTTATTTAG TGTGGAATAT 
AAATACGAAT AAAACAATAT TAATCGTTAC AATACATTCA AGAATTCTCA 
CAAAACCTGA TTGTTCTGTT TCGAACCGGT GGATTCGAAC CTTGGTTTAA 
GGTGCCGGCT TCGAGGAATC TCCGGTGTGG ACTTTCACTC CT
```

AT4G39140.5

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39150.1

Model type: Protein coding
Short Description: DNAJ heat shock N-terminal domain-containing protein
Computational Description: DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1); Has 22737 Blast hits to 22610 proteins in 3244 species: Archae - 169; Bacteria - 9228; Metazoa - 3910; Fungi - 2127; Plants - 2302; Viruses - 18; Other Eukaryotes - 4983 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39150.2

Model type: Protein coding
Short Description: DNAJ heat shock N-terminal domain-containing protein
Computational Description: DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1).
Link: InterPro Scan - TAIR