GT7167

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small, chlorotic plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT7167

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 15336368 [Map]; Strand: w
- AT4G31670.1 - [+] show detail - ubiquitin-specific protease 18
  Distance: 0; Region: exon11 (CDS)

TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTGAGA GTTCAATGGT 
AGGAGCTATT GAAAGCAGAA GCAGCACCCA TGCGACCATT GAAGACCCTG 
TATGCGAGCA ATCACCATCA CCATCGCCAT CACCATCACC ATCACCATCG 
CCATCACCAT CACCATCAGT ATTGGCCTCT GAATGTTGTA GTGAGGTTGA 
AAGGATTGAT ACATTGGATT CCGAGTCCAA CTCTTCGATT GATGACTCTG 
CAACAGATCA TCAAGAGGAT GTAGCAAATG GGAACAAAGA TCCAGAGGTA 
AAATATCAGG CTGCCGATTC TTGGTCAGAC CCTACAACTT CAACTCCATT 
GGTCTGTACA AAATCCAAAC CTCCGGTGAG AGATATGGAC ACCAAGATGA 
TCGACGCTCA GTGATGTGGT ATGTTACAAC ATTTGAAAAT CAGCAGAGCT 
TTTTAGCTTA CAAAGTTACA ATAGTGATGT AGATACTATT ACACAATGAC 
TTCTA

AT4G31670.1

Model type: Protein coding
Short Description: ubiquitin-specific protease 18
Computational Description: ubiquitin-specific protease 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.1); Has 9064 Blast hits to 8065 proteins in 324 species: Archae - 2; Bacteria - 451; Metazoa - 4433; Fungi - 1481; Plants - 999; Viruses - 9; Other Eukaryotes - 1689 (source: NCBI BLink).
Link: InterPro Scan - TAIR