GT7194

CSHL Arabidopsis genetrap mutant lines

Original: GT7194

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7194

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23890038 [Map]; Strand: w
      • AT5G59200.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7194 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTGA TAACTACGTG 
    ATCACCTCAG TTTTGAAAGC TTGTGATTTG AAGGTATGTA GAGAGATTCA 
    TGCCCAGGTT TTGAAACTAG GGTTCGGGTC TAGTAGATCG GTAGGGCTAA 
    AAATGATGGA AATCTACGGG AAATCTGGGG AATTGGTGAA TGCTAAGAAG 
    ATGTTCGATG AAATGCCTGA CAGAGATCAT GTTGCAGCAA CGGTCATGAT 
    TAATTGTTAT TCTGAATGCG GTTTCATTAA GGAGGCGTTA GAGCTTTTTC 
    AAGATGTTAA GATTAAAGAT ACGGTTTGTT GGACTGCGAT GATTGATGGG 
    TTGGTTAGAA ACAAGGAGAT GAACAAAGCG TTGGAGCTTT TTAGGGAAAT 
    GCAGATGGAG AATGTTAGTG CTAATGAATT TACAGCTGTC TGTGTTTTAT 
    CCGCATGCTC GGATTTAGGT GCGTTGGAGC TCGGGAGGTG GGTACATTCG 
    TTTGTTGAGA ACCAAAGGAT GGAGCTTAGT AATTTCGTAG GTAATGCGTT 
    GATCAATATG TACT

AT5G59200.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 80 (OTP80); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G37380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR