GT7206

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT7206

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 22972301 [Map]; Strand: w
- AT3G62020.1 - [+] show detail - germin-like protein 10
  Distance: -33; Region: promoter
- AT3G62020.2 - [+] show detail - germin-like protein 10
  Distance: -62; Region: promoter
- AT3G62030.2 - [+] show detail - rotamase CYP 4
  Distance: -703; Region: promoter

TAACTAGATT TGAAGCTCTA ATTTGAAACT GTGTGATATG TTTTTGTTCC 
GATTTGGATC GTTATAAATA TTTGAATCTG TTTGAGGAGA AATTATGCAT 
AGCTTAACTA ACTTAAACGC AAAGCAAAGC TTGGGAGTTG GAGGAAAGAT 
GTGATGTCGT TTTCTTACAC ATGTACATAT TTAATCTAAC TTTTAAGTTT 
TGGTTTTCGT TAGCTAGAAT TCTTGGTTTA ACCGAAATAT ATTCCAGATC 
AGAGATCTAT AGATCAATAA TAAAAAGTTT CAGTTTCAAA TTCTTGGTAA 
GGAGTTGGAA AGTTAATTAA AAACTTGAGT GACAAGCATT TTCTTTATTT 
AAGAGGGCTG GCCTGGTAGA TAAACAAATA GGCCCACTTG TGGTAATCAT 
CGATAGGGTA AATTAAATCG AGGTGTTAGG TTAAAGCAGA TCCGTGCCTT 
GTTTGGGCCA TGGTGCGGCC CAAGTGATGT TTTTCCTGGA TTGACAAAGA 
AAGTTACTCA ATTACCCTAC AGTTACATGG TTGTGAATGT GCCT

AT3G62020.1

Model type: Protein coding
Short Description: germin-like protein 10
Curator Summary: germin-like protein (GLP10)
Computational Description: germin-like protein 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein subfamily 2 member 2 precursor (TAIR:AT1G02335.1); Has 1676 Blast hits to 1670 proteins in 151 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 43; Plants - 1483; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62020.2

Model type: Protein coding
Short Description: germin-like protein 10
Curator Summary: germin-like protein (GLP10)
Computational Description: germin-like protein 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein subfamily 2 member 2 precursor (TAIR:AT1G02335.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62030.2

Model type: Protein coding
Short Description: rotamase CYP 4
Curator Summary: nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational Description: rotamase CYP 4 (ROC4); CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 20-2 (TAIR:AT5G13120.1); Has 16678 Blast hits to 16640 proteins in 2710 species: Archae - 109; Bacteria - 6942; Metazoa - 2940; Fungi - 1352; Plants - 1326; Viruses - 4; Other Eukaryotes - 4005 (source: NCBI BLink).
Link: InterPro Scan - TAIR