GT7212

CSHL Arabidopsis genetrap mutant lines

Original: GT7212

Phenotypes

Morphological phenotypes

Original description

  • blanched cotyledons
Anatomical entity
/structure development stage		 Phenotypes
cotyledon (PO:0020030)
  • yellow (PATO:0000324)

Original: GT7212

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT7212 - 3-prime edge 
    TTTCCCTTTT TCCTTTTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1581821 [Map]; Strand: c
      • AT3G05470.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7212 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACCGTTCA AATCCTTCTC 
    TGTTTCTCGT ATTTCTTTAA CAGAAACAGA GTTTTGTCTC TCCAAGTCAA 
    CTCCTAGTGA GTTTAGGTAC AAGAAATCGA GAGTAGGGTT TACACTAACC 
    TTCCTCGTCG AGCTTTGAGA TTTTCCCTTT TTCCTTTTAA ACGACAGCGT 
    TTTACCGTTC ATTTTCCTTT TTCATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1581661 [Map]; Strand: c
      • AT3G05470.1 - [+] show detail - Actin-binding FH2 (formin homology 2) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7212 - 5-prime edge 
    CAATGCTAGT AGTTATTCGA CCAAAGAGAT TGTGTCGGTG CACGAAAATG 
    ATGAAGAACA AACAGTAAAC TCTGTTTCTG TTCCTGTTGT TGTAATCAAT 
    GATTCTTCAG ACGATGATGA GTCTTTTCAT TCCGTTGGTG GTGGCTGTGA 
    GTATTCAAAT CCAAGATTGT CAAATGCTTC CTCTGCTTCT GGTAGTGTTA 
    ACGTTGGTTC CTCTCAACGC TTCTCAGAAC ACAAATTGGA TATTCCTGAA 
    TGTTCTAGAA GCGACTTCGG AATCTCTGTA TCTGCTCCAC CACCACCACC 
    TTCACCGGCT TCACCGCTTN CGCAGTTCTC TAACAAACGT ATTCACACCC 
    TGTCTTCGCC AGAAACCGCT AATCTTCAGA CGCTTTCGTC GCAATTATGT 
    GAAAAACTTT GTGCTT

AT3G05470.1

Model type
Protein coding
Short Description
Actin-binding FH2 (formin homology 2) family protein
Computational Description
Actin-binding FH2 (formin homology 2) family protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homolog 6 (TAIR:AT5G67470.1); Has 5495 Blast hits to 4819 proteins in 357 species: Archae - 2; Bacteria - 168; Metazoa - 2550; Fungi - 658; Plants - 1088; Viruses - 235; Other Eukaryotes - 794 (source: NCBI BLink).
Link
InterPro Scan - TAIR