GT7228

CSHL Arabidopsis genetrap mutant lines

Original: GT7228

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT7228

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22611216 [Map]; Strand: w
      • AT3G61100.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: intron1 (CDS)
      • AT3G61105.1 - [+] show detail - pre-tRNA
        Distance: -194; Region: promoter
      • AT3G61110.1 - [+] show detail - ribosomal protein S27
        Distance: -418; Region: promoter
    Flanking Genome Sequence: GT7228 - 3-prime edge 
    CCATGACCAC TGGTTAGCTC TCTCTCTCTC TATCTCTCTA ATAGTATGTG 
    GAAGAACAAA TCTCTTCTAA TTCTCTGGAT ACTGATTGTC AATGCATTTT 
    GCCGCCTTTT TTGTCTCTAC AGGAAGAGGA TAAGGTACTC CTCTTCTGGG 
    ACGTCGTATA ATGCCCACTC CCTGATGATC TCGAGCCTTC TGAGGTTTCT 
    GAGAATATCG AATCGGCTCT AGATAGACAG GGTTATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22611258 [Map]; Strand: w
      • AT3G61100.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: exon1 (CDS)
      • AT3G61105.1 - [+] show detail - pre-tRNA
        Distance: -152; Region: promoter
      • AT3G61110.1 - [+] show detail - ribosomal protein S27
        Distance: -376; Region: promoter
    Flanking Genome Sequence: GT7228 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTCGA AACCATGACC 
    ACTGGTTAGC TCTCTCTCTC TCTATCTCTC TAATAGTATG TGGAGGAACA 
    AATCAATAGT AATTCTCTGG ATACTGATTG TTAATGCATT TTGCCGCCTT 
    TTTTGTATCT AGAGGAAGAG GATAAGGTAG TCGTCTTCTG GGACGTCGTA 
    GAATGCCCAC TCCCTGATGA TCTCGAGCCT TCTGAGGTTT CTGAGAATAT 
    CGAATCAGCT CTAGATAGAC AGGGTTATCT TCCTTGTAAT GTGTCAATCA 
    GGGTTTACGG TAAGAAGAAT CATGAGTTCA AGGATGAGTT TCTCCTCGCT 
    AATATCATGT TCGTACCCGC AGGTGATCAT TTCCTCTCCC TCTTTAACAC 
    TACTCACTCC CCTTAGTTGT CTTAGATATC TCCATTGATA TAACTATGGT 
    TTTCAGGAGA TGCAAATGCG AGATATAATA GGATGGTGAA GGATATTGAT 
    AAATGGGCAT TGGACAATGA TGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22611363 [Map]; Strand: w
      • AT3G61100.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -42; Region: promoter
      • AT3G61105.1 - [+] show detail - pre-tRNA
        Distance: -47; Region: promoter
      • AT3G61110.1 - [+] show detail - ribosomal protein S27
        Distance: -271; Region: promoter
    Flanking Genome Sequence: GT7228 - 5-prime edge 
    AGGGTTTTAG ATCTGCGGCG GTGGAAGAGC GAGCTCTCTC TTGGTTTGGT 
    TGGGTTTAAA AAGAAATGGT CCGGGAACTT TGGTTTAGTA ATTTAGAAAT 
    CGAAACAGAG CAACAAAAGT TGATATGGCC GAGTTGGTCT AAGGCGCCAG 
    ATTAAGGTTC TGGTCCGAAA GGGCGTGGGT TCAAATCCCA CTGTCAACAA 
    TTTACTTTTT TGTCTTTTGG TGGATGACTC TTCTTAAAAT AAAAAGAGAA 
    TGTAAACCCT CCAATTCGAT GAGAAGGTTC AAAAGGATAG CAAGGTCAGA 
    TTATGGTGTT AATATATAAA GGAGACATTA AGTGGTAACC CTAGAAACCC 
    TTTCTCTCTC GCCTATTGTT GCCGTTGCTT GCTATCTTTC GCCGTCGTCT 
    CTTTAGCTTC TTGCGAAGAT GGTTAGTTCT CTCTTGCAC

AT3G61100.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G61090.1); Has 98 Blast hits to 98 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61105.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Leu (anticodon: AAG)
Link
InterPro Scan - TAIR

AT3G61110.1

Model type
Protein coding
Short Description
ribosomal protein S27
Curator Summary
Arabidopsis ribosomal protein
Computational Description
ribosomal protein S27 (RS27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT2G45710.1); Has 1035 Blast hits to 1035 proteins in 379 species: Archae - 136; Bacteria - 0; Metazoa - 447; Fungi - 151; Plants - 149; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link
InterPro Scan - TAIR