GT7298

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small or tiny plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT7298

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19663219 [Map]; Strand: c
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -602; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon2 (CDS)
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon2 (CDS)
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: GT7298 - 3-prime edge
```
CAAGCTTATG ACTTTTCAAT TCAAGCAGGT TGGTAACAAG ACTGCTGCAA 
CCTTTGCCCC TAGAGCTTCC ACCGGCAGTA AAAACCCTGC TCTCCCTGGA 
ACTACTCTTT ACAAAGTTTT T
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 19662922 [Map]; Strand: c
- AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: -305; Region: promoter
- AT2G48070.3 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)
- AT2G48070.1 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)
- AT2G48070.2 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)

CCGTTTTCAT CCCTACCCAT GGGGTCTCCT CTTCCATAGC TCTCACTCAT 
GGCTTTCGCC ATAGAAGAAG ATCCACCTTC CGTATTTTCG CCACCTCTGA 
CGGATTAGAA CCCAAGGACG ACCCGCCGGA ATCTCCTCTC CCTTCCTCAT 
CCTCTGCTCT CGGTAAAGAC TTGAAAAAGG TCCGCCTTTT TTCTATATCA 
TTTACGATTT TTCTGTTGAA ACCATAGGAA GACATGAAAA TGAAAATGCA 
CCATGTTAGA TTGGTCTCTA GTGCTTGAAC CTGTTGAAAG AGTTGCTCAA 
GCTTATGACT TTTCAATTCA AGCAGGTTGT TAACAAGACT GCTGCAACCT 
TTGCCCCTAG AGCTTCCACC GCCAGTAAAA ACCCTGCTCT CCCTGGAACT 
ACTCTTTACA AAGTTTTTGA GGTTCAAGGC TATGCATCGA TGTTCCTCGG 
AGGTGTCCTT TCTTTCAACC TCCTCTTTCC CTCCAGCGAA CCTGATTTAT 
GGAGGTTGAT GGGCATGTGG TCCATTTGGA TGTTCAGTAT GTCTCCTTCT 
CTACTTTCTT CTAACTTTAT TTATTCCAAG GCTGCATTTT TGCCCCTAAT 
CCTTTACTTT CTTTCCAGCT ATTCCTTCTC TTCGGGCACG AGACT

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19662800 [Map]; Strand: c
  - AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -183; Region: promoter
  - AT2G48070.3 - [+] show detail - resistance to phytophthora 1
    Distance: -17; Region: promoter
  - AT2G48070.1 - [+] show detail - resistance to phytophthora 1
    Distance: -44; Region: promoter
  - AT2G48070.2 - [+] show detail - resistance to phytophthora 1
    Distance: -44; Region: promoter
Flanking Genome Sequence: GT7298 - 5-prime edge
```
CCAACTCATT CTCTCCTCCA TAATCGCGAT AAGAAGAGAA ACTTGTTGGC 
TTTATTGAAC CGGTCCAATT CTCAACCGAA CTCCGGTATT CCAAATTAAA 
AGCCAGCAAT CAATAATTGA ATCTCGAGCC CACGACGGTT TGATTGGTTT 
AGCCATTTCT CGGCGCTAAA TATAATTTAT TAAAATGATG ATTATTGCGA 
GAAGAAAAGA TCTTTCTTTG ATTTTTGCTT GTGGATTTGG ATATCCAGTT 
TCCAATTCTC TCAAATTTGC AATTCACCTT CAAATTCACA CACATCTTCA 
ACAGCTACCT TT
```

AT2G48060.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.1

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.2

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.3

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link: InterPro Scan - TAIR