GT73

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

rootless

Anatomical entity /structure development stage	Phenotypes
root (PO:0009005)	present in fewer numbers in organism (PATO:0001997)

Original: GT73

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20497967 [Map]; Strand: c
  - AT1G54955.1 - [+] show detail - transposable element gene
    Distance: 3133; Region: intergenic
  - AT1G54960.1 - [+] show detail - NPK1-related protein kinase 2
    Distance: -1983; Region: intergenic
Flanking Genome Sequence: GT73 - 3-prime edge
```
ATATACAGAG TTACGTTAAG AAATGTCCTA ATACAGATTA AGGAAAAAAT 
GAATAAAGCG TTGGTTTGGT TAATTACATT GTTATTTCTA ATATTCTCTG 
CAACACCAAA CTCG
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 3010589 [Map]; Strand: c
- AT5G09710.1 - [+] show detail - Magnesium transporter CorA-like family protein
  Distance: 0; Region: intron2 (CDS)

AATCATATTA AGGTGATCAT CACTGCCGAC GAGGTCAGTT TACTTTCTAC 
TCGCTGCCTT CCATTTTTAC TAGACTACTT TGTAGTAGGT AGGTTCGACT 
TTGATTATAT ATTCGCATGA TCAGGTTAAA CTTAGGAGAA ATGAAATTTC 
ATCAACTCGT ATAATGATGA TACTCTACTC TATAATCTTC TGTTGCCCTC 
TTTTTGTTCC TCTGTTCTTG CTCTGTTTTA TCCTTTGTTT CTTCTCA

AT1G54955.1

Model type: Transposable element gene
Short Description: transposable element gene
Computational Description: similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)
Link: InterPro Scan - TAIR

AT1G54960.1

Model type: Protein coding
Short Description: NPK1-related protein kinase 2
Curator Summary: member of MEKK subfamily
Computational Description: NPK1-related protein kinase 2 (NP2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: NPK1-related protein kinase 1 (TAIR:AT1G09000.1); Has 135537 Blast hits to 133200 proteins in 4901 species: Archae - 150; Bacteria - 15240; Metazoa - 51035; Fungi - 12941; Plants - 33422; Viruses - 585; Other Eukaryotes - 22164 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09710.1

Model type: Protein coding
Short Description: Magnesium transporter CorA-like family protein
Computational Description: Magnesium transporter CorA-like family protein; BEST Arabidopsis thaliana protein match is: magnesium transporter 7 (TAIR:AT5G09690.2); Has 549 Blast hits to 537 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 123; Plants - 353; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link: InterPro Scan - TAIR