GT7312

CSHL Arabidopsis genetrap mutant lines

Original: GT7312

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7312

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1980153 [Map]; Strand: w
      • AT3G06450.1 - [+] show detail - HCO3- transporter family
        Distance: -117; Region: promoter
      • AT3G06450.2 - [+] show detail - HCO3- transporter family
        Distance: -565; Region: promoter
      • AT3G06455.1 - [+] show detail - ubiquitin family protein
        Distance: -389; Region: promoter
    Flanking Genome Sequence: GT7312 - 5-prime edge 
    CACTTCTTCC GGCTAACACG GGGGTTAAAT GGCTCTTATC ACTCTTTTAC 
    CAATTTTTCT ATAA

AT3G06450.1

Model type
Protein coding
Short Description
HCO3- transporter family
Computational Description
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2674 Blast hits to 1402 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 2029; Fungi - 304; Plants - 228; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06450.2

Model type
Protein coding
Short Description
HCO3- transporter family
Computational Description
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06455.1

Model type
Protein coding
Short Description
ubiquitin family protein
Computational Description
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G01000.1); Has 8324 Blast hits to 4012 proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa - 3789; Fungi - 883; Plants - 2106; Viruses - 164; Other Eukaryotes - 1382 (source: NCBI BLink).
Link
InterPro Scan - TAIR