GT7384

CSHL Arabidopsis genetrap mutant lines

Original: GT7384

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7384

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT7384 - 3-prime edge 
    TAAATTAATT CACATTCTTA CATAAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 325974 [Map]; Strand: w
      • AT3G01960.1 - [+] show detail - unknown protein; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; B...
        Distance: -887; Region: promoter
    Flanking Genome Sequence: GT7384 - 3-prime edge 
    CACATAACAG GCAGAATCTT CTCAAAAGAT ATGCTTTCTT CCTTTTCTAT 
    TCTAGAGTGT TTTGATGACA TCGGCACGAA GATAATGTTA TTTTACAGAT 
    TTAGCTAATT AAGTCTTTCG TAATAATTAT CAAACTCAAA TTGGTGCGTT 
    TTAATTTACC GCCGCCACAA TACCGCACGA AGATAATGTT ATTCGCTTGT 
    GAATTTCTTT ATATTAATCT CTCACGAATA AATTAATTCA CATTCTTACA 
    TAAATCGAAA CTTATCCACA TTTTTTTGAT TCTTTTCAAA AGTTATACGA 
    AAAAGTTAGT TACACAAAAT TTATTAAACA CGGATAAAAT AACGGGTCCT 
    TAATCTCAAC ACTTTCACTT TTTTCCGAAC CCATTGAATG GAAAAATGTT 
    ATGTTCTTTT TTTATATAGC AATTGGGAAA ATATGTTTTG CAATGAGAAA 
    TTGTAGAGTT TGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 326152 [Map]; Strand: w
      • AT3G01961.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 801; Region: intergenic
      • AT3G01970.1 - [+] show detail - WRKY DNA-binding protein 45
        Distance: 245; Region: intergenic
    Flanking Genome Sequence: GT7384 - 5-prime edge 
    AATCCAATAA TATCACCATA TTCCGGATGA CATGGTCCTT GGGTCTTTTT 
    GTAAAAATTT GGGCTTGTTG GGCTGACTTG ACATTATGAA AAACACGAGA 
    GCCCAGGCTA ATGGGCCTAA CAAAGAAAGC GTCCTCCGTT CTAAAGCGAA 
    ACGTGAAGCA TATTCGCAAT TGGATCCAAG AAGAAACCTC AAAGTTAGCT 
    TTCGTACTCT TTCTCATCTT CATCTCTTNC GACGACTTAG CTTGTCACTA 
    GTTTTGGAAT AATCGGTAGG TTTGGGATAC ATAACATTGT TTTTGTAGAT 
    GATAGACTCA TCATTGCTTC TTTATGTTTG GTAATTTGAT GATGAATATA 
    CTTTCGATTA CAGGGCAGCC GAGACTAAGA CACCAAAGCA GATGGATTCA 
    AAGGTCCCAT AAAGACAAAG ATAAGGATTA GTATTTTTGA GATATGTGAG 
    TTGCTGCTAG TTTAAAAGTA AAGGTCTGAT GGTGTGAGCC CAACGTTTTT 
    GGGAAAGTAA ATATTACAAT CCAATTCCTC TAATATTCCT TCAAG

AT3G01960.1

Model type
Protein coding
Computational Description
unknown protein; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01961.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01970.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 45
Curator Summary
member of WRKY Transcription Factor; Group I
Computational Description
WRKY DNA-binding protein 45 (WRKY45); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 75 (TAIR:AT5G13080.1); Has 3497 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3482; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR