GT7421

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT7421

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 11762641 [Map]; Strand: c
- AT4G22230.1 - [+] show detail - Arabidopsis defensin-like protein
  Distance: 0; Region: exon2 (CDS)
- AT4G22230.2 - [+] show detail - Arabidopsis defensin-like protein
  Distance: 0; Region: exon2 (CDS)
- AT4G22235.1 - [+] show detail - Arabidopsis defensin-like protein
  Distance: -984; Region: promoter

TTTTACCGAC CGTTACCGCC CGTTTTCATC CCAATTGTAC AGAGTGGTGC 
TGAAAAGAAA GCTGTGATTT GCAAATGATA AAAAACGACG TCACTTTGTG 
TCTGTGTTTT GCGATTTGCA TGTTAATGAT TTCAGCTCAA AATCTATATT 
TGAGTGTTTG CCTTCTACAG ATCTGTTTGT TTTGAATTGT CAAGTCTTAA 
ATAAAGTTGG ATTGTTTTCC GATTATGACC TGACCTATTC ATCATATTTT 
TTTATTTTTG TCTAATTGAA ATCTAAATCG GAGGGGAAAA AATCAACAAA 
AAGAATTTCA TACGAGTACA TTAATTCTTG CAAATGTTAA ATTATCCGTC 
TTATGATTTA TACAAATAAG AATTGAATTA AGGGAGAAAC TGATAAATAC 
TTGTTCCTAA CAAAGTTTAA TAGATGTGTT GAGAAAACAC ACTTGTCCGT 
CGGTATAGAC ACTTATTCAC CAATTTAGAA CAATATGTAG ATGTAGTTAG 
CTACATATGG TACTGTCAAC TGGA

3 prime edge [+] show sequence

Chromosome: 4; Position: 11762641 [Map]; Strand: c
- AT4G22230.1 - [+] show detail - Arabidopsis defensin-like protein
  Distance: 0; Region: exon2 (CDS)
- AT4G22230.2 - [+] show detail - Arabidopsis defensin-like protein
  Distance: 0; Region: exon2 (CDS)
- AT4G22235.1 - [+] show detail - Arabidopsis defensin-like protein
  Distance: -984; Region: promoter

TTTTACCGAC CGTTACCGCC CGTTTTCATC CCAATTGTAC AGAGTGGTGC 
TGAAAAGAAA GCTGTGATTT GCAAATGATA AAAAACGACC TCACTTTGTG 
TCTGTGTTTT GCGATTTGCA TGTTAATGAT TTCAGCTCAA AATCTATATT 
TGAGTGTTTG CCTTCTACAG ATCTGTTTGT TTTGAATTGT CAAGTCTTAA 
ATAAAGTTGG ATTGTTTTCC GATTATGACC TGACCTATTC ATCATATTTT 
TTTATTTTTG TCTAATTGAA ATCTAAATCG GAGGGGAAAA AATCAACAAA 
AAGAATTTCA TACGAGTACA TTAATTCTTG CAAATGTTAA ATTATCCGTC 
TTATGATTTA TACAAATAAG AATTGAATTA AGGGAGAAAC TGATAAATAC 
TTGTTCCTAA CAAAGTTTAA TAGATGTGTT GAGAAAACAC ACTTGTCCGT 
CGGTATAGAC ACTTATTCAC CAATTTAGAA CAATATGTAG ATGTAGTTAG 
CTAGTTTATT AACTACAGTT TTTCTATTTA GCTAATTGAT TTTATTTAGC 
ATTTACCACT TTCTTTGGCA TTGTTGATTA CTATCTAAAA GTTGACTAAA 
CAAAATACGT GTTTAACGTT TTTTTAGCTG TCATAATATA GTAATATACA 
ATTCGAGTTG GTATAATAAA TATCTGATCG CATCTA

5 prime edge [+] show sequence

Chromosome: 4; Position: 11762551 [Map]; Strand: c
- AT4G22230.1 - [+] show detail - Arabidopsis defensin-like protein
  Distance: 0; Region: exon2 (CDS)
- AT4G22230.2 - [+] show detail - Arabidopsis defensin-like protein
  Distance: 0; Region: exon2 (CDS)

CACGGCAGCA AACACATAAC CCCATACCAG TAATACCACC AACAGGTATG 
CATCGGCCTC CAATAAACTT GCTGTCCAAT TGCTTGCATG GTTCAATACA 
AGTAGAGCTC TTCTCATAAC TATTACATTC CCCTTTATCG TAGTCACACA 
CTTGCCTCCC ATCTACTTCT GTCCAATCAA TAGGAAGATA CTACATTTCA 
TAAACATGTT TTATTTTAGA TCTTGGGATC AAAGACTTTG GTTTTTTTTA 
CGTACCTGTA GGAGATATGA GGAGAATGGA GAGACAAACG ACTACTGCAA 
TAGCGACTGT GCTCAACCTT AAGCTCCCCA TTAATTGCTT ATTAGTTCTT 
AGCTTCTTTC TTTCTATTTT GTTTCCCTCT CTCTCTTTGT GATTGATTCA 
TTTAGGCAAA AGGCGAGTTT TTAATTTATA GCTACATATG GTACTGTCAA 
CTG

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 11762051 [Map]; Strand: c
  - AT4G22230.1 - [+] show detail - Arabidopsis defensin-like protein
    Distance: -241; Region: promoter
  - AT4G22230.2 - [+] show detail - Arabidopsis defensin-like protein
    Distance: -241; Region: promoter
Flanking Genome Sequence: GT7421 - 5-prime edge
```
TAGTTAACTG AATACACCCC CGACTCTTAT TGTAGATGAT CAATACTATT 
GTATTGTGTA GATAAAGATA GATATTTAGA ATCTTTCGTT TGATTTCTTC 
ATTAAATTAG TCAACTTTTA GATACTAATC AACAATGCCA AAGAAAGTGG 
TAGATGCTAA ATCAACGGAG ACCAAGCGCT CATCATCATC ATTGATTC
```

AT4G22230.1

Model type: Protein coding
Short Description: Arabidopsis defensin-like protein
Curator Summary: Encodes a defensin-like (DEFL) family protein.
Computational Description: Arabidopsis defensin-like protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin-like protein, Arabidopsis (InterPro:IPR022618), Low-molecular-weight cysteine-rich family (InterPro:IPR020191); BEST Arabidopsis thaliana protein match is: Arabidopsis defensin-like protein (TAIR:AT4G22235.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G22230.2

Model type: Protein coding
Short Description: Arabidopsis defensin-like protein
Curator Summary: Encodes a defensin-like (DEFL) family protein.
Computational Description: Arabidopsis defensin-like protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin-like protein, Arabidopsis (InterPro:IPR022618), Low-molecular-weight cysteine-rich family (InterPro:IPR020191); BEST Arabidopsis thaliana protein match is: Arabidopsis defensin-like protein (TAIR:AT4G22235.2); Has 34 Blast hits to 34 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G22235.1

Model type: Protein coding
Short Description: Arabidopsis defensin-like protein
Curator Summary: Encodes a defensin-like (DEFL) family protein.
Computational Description: Arabidopsis defensin-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin-like protein, Arabidopsis (InterPro:IPR022618), Low-molecular-weight cysteine-rich family (InterPro:IPR020191); BEST Arabidopsis thaliana protein match is: Arabidopsis defensin-like protein (TAIR:AT4G22230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR