GT7425

CSHL Arabidopsis genetrap mutant lines

Original: GT7425

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT7425

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218452 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -761; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT7425 - 3-prime edge 
    CTATTTTATC AAATTAAGAT TTAAACAATG CTAATTCAGA TGCTTAAACA 
    CTCTAACAAA GGGAGAGAGA AATTATCAGA ACGAAGCTCG GATCGAGAAC 
    GAGAAATTGA AGCGCTTACC AATTGGGGAA AAAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218631 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -940; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT7425 - 5-prime edge 
    CGGTAAGAGT AACAGGTACC AGCAACAACA GGGAGCAGCC ATGCGCTTCA 
    GTTGATACAG ATAGTGTAGG ACAGGAGAAT GCTACAGTTG AATTGCCCAA 
    ATTGAGTGTG GAGCGACAAC AGATGAAGAA GAAGAAAAAG ACTGCAGGGT 
    TTAATTTGCG CAAGAGTGTA CCATGGGATA GAGCTTTTTC AACGGGAGAA 
    GGTGACGTTT TTTTTACCAA TTTCCTGTTA GCTAGCAAAG GTCACAGATT 
    TGTGCTATGG ACTAAAAATC TTAAGATGTG TGATATGGTC ATGAACCAGG 
    TGTTTTGGAT TCATCTGAGT TATCTAAAAT AACTGGAACT GCTTGCCATC 
    TTGGTGGAGA TCGGTTAGCT GCCATTCAGG AAGAGTACAG AGAGTCAATG 
    TCAGCTTCCA NATGTAATGT TTCACCAGGA CTACAAGCAC TTGAAGAAAA 
    ACTTATTTAA CGACTTGCCT GTGAATAGTA AAAACAGAGA GAAGAAGCTT 
    GTCAGTGGCA TAATGCCCAA GTACGGATCA CCATCTAAAT CCCAATCTTC 
    CTCGGTGAGT TTACTGGACC TAAATATTGT GGAGCTAATG A

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT7425 - 5-prime edge 
    CCCCCCCCCC CCCCCCCCCC C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218644 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -953; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT7425 - 5-prime edge 
    AACAGCACCA GCACAACAGG AGCAGCCATG CGCTTCAGTT GATACAGATA 
    GTGTAGGAAA GGAGAATGCT AAAGTTGAAT TGCCCAAATT GAGTGTGGAG 
    CGACAACAGA TGAAGAAGAA GAAAAAGAAT GCAGGGTTTA ATTTGCGCAA 
    GAGTTTAGCA TGGGATAGAG CTTTTTCAAC GGAAGAAGGT GACTTTTTTT 
    TACCAATTTC CTGTTAGTAG TAAAGGTCAA AGATTTGGTC TATGTTACTA 
    AGAATCTTAA GATGTGTGAT ATGGTCATGA ACCAGGTGTT TTGGATTCAT 
    CTGAGTTATC TAAAATAACT GGAACTGCTT GCCATCTTGG TGGAGATCGG 
    TTAGCTGCCA TTCAGGAAGA GTACAGAGAG TCAATGTCAG CTTCCAAATG 
    TAATGTTTCA CCAGGACTAC AAGCACTTGA AGAAAACTTA TTTAACGACT 
    TGCCTGTGAA TAGTAAAAAC AGAGAGAAGA AGCTTGTCAG TGGCATAATG 
    CCCAAGTACG GATCACCATC TAAATCCCAA TCTTCCTCGG TGAGTTTACT 
    GGACCTAAAT ATTGTGGAGC TAATGAGGGT CATAAGTCGT TTCTTTCCTT 
    GCGTAAATAT ATATATTTT

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60150.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR