GT7431

CSHL Arabidopsis genetrap mutant lines

Original: GT7431

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7431

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10784977 [Map]; Strand: c
      • AT3G28730.1 - [+] show detail - high mobility group
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7431 - 3-prime edge 
    TTTACCGACC GTTACCGCCC GTTTTCATCC CTACGGACGG CCACTCCTTC 
    ATAATATCTC TCTCAGCGGT CGCGGTGGAA AGGTACCATC TTCTCTCTCT 
    GTCTCCTTCT ATCTCTCAAG ATCTTTCAAT TCCTTCAAAG TTTTCACCTT 
    TTCCTCTTCC TTCGAAAACC CTAATCTCCT TTCTCTGTAT CCCCTTTTGC 
    TTCCGCCGCT CGATTCTTAA AGAACTCAAT GAGTCAAATT TAGGGTTAAA 
    AAAAAGATTG TCGCTTTCAT TTTTCAGTTG TGTTGTTTTC TTGTTTACAA 
    TTGTTAAAGC TGCGGTAGTT TTTAGGGTTT TCTTAAGGCT AATTAGGGTT 
    TCAATTTTGG TTTTTTAGAA CCCGGGTTTA CTTAAAATCA ATTCTGGAGG 
    AATTCAATGG AAGAAACAAG GTGGTGGAAA AGCTGTGGAA GTTGATAGAT 
    CTGATATTGT AAGTGTTAGT TGGACGAAAG TGACAAAGAG TAATCAATTG 
    GGAGTCAAAA CCAAAGATGG ATTGTACTAC AAGTTCGTTG GATTTCGAGA 
    TCAGGTTTGT GTGTGTATAT CTTTTTTATT TGATTTGATA TTGTAATGTT 
    TGTGCTTGTT CTGATTCCTT TGTTTTGTAG GATGTTCCAA GTCTGTCTAG 
    CTTTTTCCAA AGTTCTTATG GAAAAACACC GGATGAGAAG CAATTATCAG 
    TTAGTGGTCG TAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10784896 [Map]; Strand: c
      • AT3G28730.1 - [+] show detail - high mobility group
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT7431 - 5-prime edge 
    TGGCCGTCCG CCATGGTTTT CTGTTGAGAG ACACGAGAGA GACGAGAAAG 
    CGAGAGCGAA AGAGAGAGAG TGATTTTTTT TTTTCCAAAC TATGATATCA 
    ACTTTTATAC ATAAACCCTC AGGGGGTTTA ATTTTGGGAA AAAAACCAAT 
    TTTCAAAAAT TAAATTTTCC GGTTTAATTG AATTTTTGAG TTTTTGGTTT 
    TGCAAATTTG GGAAAAAAAC CTTTATCAAA AAACGGTAAA AACAAAAGGT 
    TGTTTTGAGT TTTGGATTTT TTCCCATTTG GAAAAAAAAC CTCTTATAAA 
    ACAAAATTTT ATATCAATTA TGTAGGCATG CGGGTTCGGT TTACCAAACC 
    GGTTACTTCG GTTTTGTTTG GCTTTGGTAA GGAGGGGAAA ACCGGTCTAA 
    GGGTATGGAA AAGTGATTAT TGAAGGAAAC AATAGGAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10784854 [Map]; Strand: c
      • AT3G28730.1 - [+] show detail - high mobility group
        Distance: -35; Region: promoter
    Flanking Genome Sequence: GT7431 - 5-prime edge 
    CGAGAAAGCG AGAGCGAAAG AGAGAGAGTG ATTTTTTTTT TTCCAAACTT 
    TGTTTTCAAC TTTTTTCCTT AGCCCCTCAG GGGGTTTAAT TTGGGGAAAA 
    AACCCATTTT TCAAAATTTA ATTTTTCCGG TTAAATGGAA TTTTTGAGTT 
    TTGGGTTTTG CAATTTTGGG AAAAAGCCCT TTTTCAAAAA ACGGTAAAAA 
    CAAAGGGTGG TTTTGAGTTT GGGTTTTTTT CACTTTGGGA AAAAAAACCT 
    TTTTTAAAAC AAATTTTTTT TTAAATTTTT TAGGCTTGCG GGTTCGGTTT 
    CCCAAACCGG TTCCTTCGGT TTTGTTGGGT TTTGGTTAGG AGGGGAAAAC 
    CGGTTTAAGG GTTTGGAAAA GTGTTTTTTG AAGGAGCCAT TAGGATTGTG 
    ATGGGGCTTT TCAAAATAAT TGGCCACCCA ACCACTGGTT CCGGCCTTTG 
    TTTTTTTTGT TCAACTTTCC CAAATGGAAA CAAGCTCTTA ATAGTGGTCC 
    ATGTGGTTTT AACCTCAAAA CCCAACCTTT CAAAGTTTTT TTTTCCAATG 
    TAATGCCTTT AAATTCCCCT

AT3G28730.1

Model type
Protein coding
Short Description
high mobility group
Curator Summary
encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC.
Computational Description
high mobility group (HMG); CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein (InterPro:IPR000969), High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B1 (TAIR:AT3G51880.2); Has 8066 Blast hits to 7188 proteins in 653 species: Archae - 0; Bacteria - 14; Metazoa - 5623; Fungi - 822; Plants - 671; Viruses - 15; Other Eukaryotes - 921 (source: NCBI BLink).
Link
InterPro Scan - TAIR