GT7438

CSHL Arabidopsis genetrap mutant lines

Original: GT7438

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7438

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20750894 [Map]; Strand: c
      • AT5G51040.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3...
        Distance: 0; Region: intron1 (CDS)
      • AT5G51040.2 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3...
        Distance: 0; Region: intron1 (CDS)
      • AT5G51040.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT7438 - 3-prime edge
    GACCGTTTTC AGCTCCATTC GTGAACACGC CTGAAAAAAA AATTGTGGGA 
    TTGATATTTT TTCTAGGAAT GGAGTTGATT TGGGGGCGAG ATTCTTCTGT
    GAGAACACTG CGTCTGCCCA GAATTTCGAT ATTGATCTCT CTAACGAAGA
    GAATAAGAGA AGAACGATCA ACAGGTTTGG TTATAATTTT GGATTCAATT
    T

AT5G51040.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51040.2

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 368 Blast hits to 368 proteins in 141 species: Archae - 0; Bacteria - 216; Metazoa - 8; Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51040.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631).
Link
InterPro Scan - TAIR