GT7455

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT7455

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 23727771 [Map]; Strand: c
- AT5G58740.1 - [+] show detail - HSP20-like chaperones superfamily protein
  Distance: -157; Region: promoter

CTTTAAATTT TCTGTGGAAT TGTGAAAGAG TGTTCTACTT CTGGGGACAA 
CAAAAAAATG TTTCTTGGAA CTTGGAAGAA CTTCAAATAA AACGGCATGG 
AGTTTTGACT TCCAAGTTAG AAACGGAGTG TACCTCAAGA AAAGGGATCT 
AAGCGTAAAT AACTAAAACT AAGAACCCTA AAAGAAAATA CATGATTATG 
AAAGGACTGA ATCATAAATG CCTCTTCTCC AATGTTGAGA CGAATTGAAA 
AGGAAC

5 prime edge [+] show sequence

Chromosome: 4; Position: 11212058 [Map]; Strand: c
- AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
  Distance: 0; Region: exon1 (5UTR)

GAGGTTCGAG GAGTGATCGA AGGATCGAAT TGGGAGACAT GAGATCTGCA 
TATCACTATT GAATCTTGTT CTTCACTAAA ATCGAACCTC GAAGATTAAA 
TTGCGGATTC GGGCCGTCTC CGTCAGCAGC GGTGAGAATA CAGCCGAAAC 
CCTAACATCA ACGGTGGTAG AGAAATAGAG ACGACGACGA CGACGAGAAG 
ATTGGATTTG TAATTGAAAG AGTCGGTTAA GACTAACCGG AAACCGTAAC 
AGTCATAACC ATCGGTTTAC TAGGCTATTT TAAATTTTGT TTTAGACAGT 
TATACATATC CGGTTTAAGA AACACCATTG AATTGGTCTC AAGGGCCAAC 
AGACTTGTCT CAATAGAGAT AAGAAATAAA GAAACCCAAA ACGCAAGAAA 
CGGAAAAGCA TACATTGTTG ATTGTATTTG GG

AT4G20960.1

Model type: Protein coding
Short Description: Cytidine/deoxycytidylate deaminase family protein
Curator Summary: encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational Description: Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58740.1

Model type: Protein coding
Short Description: HSP20-like chaperones superfamily protein
Computational Description: HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G27890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR