GT7465

CSHL Arabidopsis genetrap mutant lines

Original: GT7465

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7465

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3498647 [Map]; Strand: c
      • AT3G11165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT7465 - 3-prime edge 
    GACCGTTTTC ATAGACAGAA CAACGTTACC TCTGCTACGA CGGGGAGAAG 
    AAAAATTACC GCGTGACCTC GTAGAGAAAT TTCGGCTCTG TAAAGATTTC 
    GTCTTGTTCA ATAGATCGAA AAGAAACCAA CACAAAAATG AAAGAAAAAG 
    ATATAAATCT TCGATTTACC TGAGCGATTA TGGATCTCAG ACTGTTGTTG 
    AGTGGCATCA TCGGAAATTA GGGTTCGCTC TTCTTTCTTC TTCGCCTCTT 
    ATTTGTGATT TTCTTCTCCC CAAACTGAAA GAAATTCATG CGGAATCAGA 
    GAACGTTACC ATGGTGGGAT GAAGATGAAT TGCGGCACTG TAAAGTTTTA 
    GTCTTGTTCA ATAGATTGCA CAAAGAAAGT AAACAAACAA CAACAAAAAA 
    AAAGACTGTA GAAAAGAAAA AAAAAGGGAT ATTCTTACCG GAATTTTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 172045 [Map]; Strand: c
      • AT4G00390.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7465 - 3-prime edge 
    TACCTTTAGG GTCCCCAAAT AAACTTTGAC AATTCAAAAG CTTTCTTATC 
    ATGAGCTTTC ACAAACCTAG GTTCGTCCTT TCCTTCTTTA GCACGGTACT 
    TCTTCCTTAA ACTCCTAACC TTATCCGAGA ATTGACTCTT ACTAACCTCA 
    AAGCTGATAG ATTTCTTCTG GAACTCGTAA AACGCATTAG TATCTGCGGA 
    AGGAGACTTC CCTGTATCAG CATGATAATC TATCATTCCT TGTAACATAG 
    AGATTTCGTC ATCGTCACTC CATAGTCTTT GAAAAAGTGC TGGCTTCTTT 
    ACACTCTCTT CA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27442996 [Map]; Strand: w
      • AT1G72940.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT7465 - 5-prime edge 
    TGGTTGGGAT TGATACACAC ATGAAGGCTC TTAACAAAAA ACTGGACTTG 
    AATTCCAACA AAAGTTTGAG AGTGGTTGGG ATTTGGGCAA GAGGATACAA 
    TGGTAGATCA GCTTTAGCTA AATATGTTTA TCAAGACATC TGTCAACACT 
    TTGACAGCCA TTGTTTCTTG GGAAGCGTGA AAAGGATTTC TCAGGGTCGT 
    CACTTATCGC ATCTACACGA AGAGTTTCTG ATAAGGATTC AAGGAAGTAA 
    ACATAACCTC AAGGACCAAA AGGTTTTGCT TGTGGCTGAT GATGTTTATA 
    AGCTTGAACA GTTAGATGCT CTTGCAGAGG ATTTCAACGG GTTTGGTCCG 
    GGAAGTGTTG TTATCATCAC TACACAAGAC AAGCATCTGT TTGTTTCTGC 
    TGGTATAAAG CTTGTCTACG AAGCGGAGCT TTTG

AT1G72940.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain-containing protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72950.1); Has 4863 Blast hits to 4729 proteins in 156 species: Archae - 0; Bacteria - 30; Metazoa - 0; Fungi - 0; Plants - 4833; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11165.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00390.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; LOCATED IN: nucleolus; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT1G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR