GT7472

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

dead plants or very tiny

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT7472

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 19537404 [Map]; Strand: c
- AT2G47640.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: intron2 (CDS)
- AT2G47640.2 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: intron2 (CDS)
- AT2G47640.3 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: intron2 (CDS)
- AT2G47640.4 - [+] show detail - Small nuclear ribonucleoprotein family protein
  Distance: 0; Region: intron2 (CDS)

GTTTTCATCC CTAGTGGAGA AGAAGCTCGC GATAAGTCAA CATGAGGTAT 
ATCTCTCGAT GGTTCTAAGT TTCTTCTGCG TTTTTTGGTA CTCAATTTGA 
GACTTTTCTA ACACTGTGGT GTTTCTCTTG ATTTTCTATA TTTTATCTCG 
CAGCAAGCCA ATGGAAGAGG ATACCAATGT AAGCTTCCTT CTAATTTCTC 
TCGCTACTGC TTTTCTCGAT TCGCTGTTTG CCATAATTCA TCTACTGTTT 
CCAGTTTCAT CAATCTTAGC TGTCTCTAGT ACTTGAGTAG GACTGTGCCA 
CTAAAGATTT TCACTGAATT TTTGTTCCGT TCTGCGTTGA ATGGGCAGTA 
GAGAATTGGA TGTTTTCATC ACTTCTGCCC TTTGTTGTAA TGTCATTTGA 
TTGTTGCTGT TATAAACTCC ATTAGTTTCC TGCTTGTATG ATACTCTTAA 
GGATGTGTTC TCTCCTTAAA TGTTGTTTCT AATCATCATG CTTGATACTG 
TCC

AT2G47640.1

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in 229 species: Archae - 2; Bacteria - 0; Metazoa - 328; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47640.2

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2); Has 797 Blast hits to 797 proteins in 230 species: Archae - 2; Bacteria - 0; Metazoa - 331; Fungi - 182; Plants - 143; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47640.3

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47640.4

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in 229 species: Archae - 2; Bacteria - 0; Metazoa - 328; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR