GT7664

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT7664

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 5257412 [Map]; Strand: c
- AT5G16090.1 - [+] show detail - INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterP...
  Distance: -182; Region: promoter

AGCGAGTGAA AAGAAATGAG AAGAAAACGG CAGAATTTAT ACGGTCCCTC 
AATAACTACA GTGAATAATC CAACTAAAAT ATGACACGTG TTAATATCTT 
AACTGAATTC TTGTAACCGT ATTTCCCTGA CGGCTGACGA GCGTCACTAT 
TGGGCCTATA TTTTCATTTC TAAGCCCATT ATACCACAAG CTTCGTGCAA 
CAATATGATC GAAAACAGAA GCAGAACAAA ATAAAAGAGA AGAGTGAATG 
TGTTTTATTT GAATTTTTCA AGAATTTTAT TGTTCTGCTG GAAACGTCAA 
TAATTGTATA CTAAAAAAAT ATAATTCAAC TATTTGTGTA TCAAAACGTA 
ACAAACGATA AAATCTACGT AGTGTATCAA GTCTTTGGAT TTTGAATGAA 
AAACAAATTA CATATTTTTG AGTATGTCAC TGCAAATTTT GTCTATTTGA 
CGTTGTANCC TCTCAATCTC AGCTTCAGTA CGAGCCTTAA CTTCACCATC 
CTTTGCCGTG AGTAACAAAG TCTTCAATGC CTCGATTTTT GCCTGGAGGC 
TTTTGATCTA CAAATCAATT TAAAA

5 prime edge [+] show sequence

Chromosome: 5; Position: 5257279 [Map]; Strand: c
- AT5G16090.1 - [+] show detail - INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterP...
  Distance: -49; Region: promoter

CTCTAATCTC TCTCTACTCG GAAGTTTGCT ACCGGCGGCG ATTGATCGGA 
ACAGATTCTT GCCGGAGAAT CGGTTTCGGG AACTGGAATC ATATTCCGTT 
GGTGTGCAAG AAGATGAAGA TCATTGTCAA AACATTGAAG GGGATTCGCT 
TCGAGATCGA AGTAAAACCC AACGATTCGG TAAGGCAAAT CTCAAGAATC 
GTATATGAGG AAGTTATTTG GTCACTGGTT CTTTGATATG GCGGTAATTA 
GGGTTTTCTC TGTTAATCAT TCATCTCTCT CGA

AT5G16090.1

Model type: Protein coding
Computational Description: INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.1); Has 1311 Blast hits to 954 proteins in 240 species: Archae - 0; Bacteria - 0; Metazoa - 634; Fungi - 179; Plants - 321; Viruses - 27; Other Eukaryotes - 150 (source: NCBI BLink).
Link: InterPro Scan - TAIR