GT7678

CSHL Arabidopsis genetrap mutant lines

Original: GT7678

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7678

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2662645 [Map]; Strand: w
      • AT1G08440.1 - [+] show detail - Aluminium activated malate transporter family protein
        Distance: -382; Region: promoter
    Flanking Genome Sequence: GT7678 - 3-prime edge 
    AAAAGCGGCT CTTAGTAGCA TACTTTACTC TTGTTCTCTT AATTTATTTC 
    CGAACTTTCT ATTAAAATTC CACGTCCAAA A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16567292 [Map]; Strand: w
      • AT3G45220.1 - [+] show detail - Serine protease inhibitor (SERPIN) family protein
        Distance: -962; Region: promoter
    Flanking Genome Sequence: GT7678 - 3-prime edge 
    TACTTTCATC CCTGGTCAAA TCGTACCTTC TTATTTAGTT CAATTGCAAA 
    GATGTTTCTG TTAGAATTGA GTCCATGATT AAAATATCAT ATATGCTATA 
    CTTTATATTT AAAGGCAATG GATGTTATGT GTTACATATC ATATACTACC 
    AATGGGTGTG AGTAAGAGA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT7678 - 5-prime edge 
    TCCTAGCTCC TCACTAACT

AT1G08440.1

Model type
Protein coding
Short Description
Aluminium activated malate transporter family protein
Computational Description
Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 1 (TAIR:AT1G08430.1); Has 610 Blast hits to 608 proteins in 146 species: Archae - 0; Bacteria - 224; Metazoa - 0; Fungi - 10; Plants - 352; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G45220.1

Model type
Protein coding
Short Description
Serine protease inhibitor (SERPIN) family protein
Computational Description
Serine protease inhibitor (SERPIN) family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT2G25240.1); Has 6658 Blast hits to 6597 proteins in 478 species: Archae - 68; Bacteria - 377; Metazoa - 5173; Fungi - 11; Plants - 343; Viruses - 470; Other Eukaryotes - 216 (source: NCBI BLink).
Link
InterPro Scan - TAIR