GT7679

CSHL Arabidopsis genetrap mutant lines

Original: GT7679

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT7679

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2576624 [Map]; Strand: w
      • AT3G08490.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant prote...
        Distance: -1409; Region: intergenic
      • AT3G08500.1 - [+] show detail - myb domain protein 83
        Distance: 170; Region: intergenic
    Flanking Genome Sequence: GT7679 - 3-prime edge 
    GGAGGAACCA ATCACCATGC ATGGTTACAT TAGTACATGA AATGTGAATA 
    GGAAGGTACA TTGAGATTTT ATTTGCTGAG GAAGTACTTA AATAATGGCC 
    CACACAGCAG TGAGGTGATT AGTTGTTTCA TTTGTATAGC TTTCTCTTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2576778 [Map]; Strand: w
      • AT3G08490.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant prote...
        Distance: -1563; Region: intergenic
      • AT3G08500.1 - [+] show detail - myb domain protein 83
        Distance: 16; Region: intergenic
    Flanking Genome Sequence: GT7679 - 5-prime edge 
    CTCTCCCGTT TCTCCCGTTT CTATGAGCAA TATTATTGTG AATAATAAAA 
    TACATATGAG TGGGAAAACA AAGGGACAAG AAGAGAATAT ACCAATTCTG 
    AATTATTATT TTTTAAAGAC TTTTTTGCCA CAAAAAAATG AGACTCTTTT 
    AGAAAAAAGA TCGATCCACT TCATGTTAAA AAATATGTGT ATAAGAATGA 
    ATAAGAAGGA ATGAGTAAAA GAAGATAGAA TGAAATGAAA AGAGAGAAAT 
    TGTCAATCGA CTTGGAAATC AAGGAAGGGA AAAGAAGAGT TGTTATCGAT 
    GAGACCATCC AAATCCCAAT CTCCGATTTT AGGGTTTTCT ATTTCCCAAG 
    AACCATTCTC TATCCCCAAC ACATTCCCTA CCTTGAAGCT CTCTGAATGA 
    CAAAGATTTT TGCTATTGAA GCAAGGATCA AGGGCCTGTA AGTTTAGGTT 
    GTTGCTTGTA CTACAAGCAA TGACGTTGGT ATTCTCCGAG GGGGGGAATG 
    AACCAATCAT CACCTTCTAC TGATACTCTC TTGCTAATTG GATCAAGAAT 
    TGTGTTTCCA TAATCTCCTA AACCATTAAC GCTGAACACA TTCACT

AT3G08490.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G08500.1

Model type
Protein coding
Short Description
myb domain protein 83
Curator Summary
Encodes a putative R2R3-type MYB transcription factor (MYB83).
Computational Description
myb domain protein 83 (MYB83); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 46 (TAIR:AT5G12870.1); Has 9098 Blast hits to 8506 proteins in 552 species: Archae - 0; Bacteria - 0; Metazoa - 787; Fungi - 464; Plants - 5991; Viruses - 4; Other Eukaryotes - 1852 (source: NCBI BLink).
Link
InterPro Scan - TAIR