GT7755

CSHL Arabidopsis genetrap mutant lines

Original: GT7755

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7755

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2243968 [Map]; Strand: c
      • AT4G04510.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 38
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT7755 - 3-prime edge 
    TACTTTTAGA TGCATATATG AACCCTAAAG TTGCAGACTT TGGGATGGCG 
    AGGTTGTTCA ACATGGACCA GACTCGAGCA GTGACAAGAA AAGTAGTTGG 
    AACCTTGTAA GTATCCTCTG TTTTTACTGA TTCTTTTAGA CAAAACAAGA 
    TACTCTGTTT TTTTTTACCC TAAATTTTCG AGATTCTTGG AATCAGAAAC 
    TAATTTGAAT TTGTTTTAGT GGCTATATGG CTCCCGAGTA CGTTAGGAAC 
    AGAACATTTT CAGTCAAGAC AGACGTTTAC AGCTTCGGAG TCGTGCTTCT 
    CGAGATGATA ACCGGTCGAA GTAACAAGAA CTATTTCGAA GCCCTCGGGC 
    TCCCTGCATA TGTAAGCAAA ATCCAGTCTT GTTTACTACT TTAGACACAA 
    ATGAATCTCA AAAGATAATT TGAGTATAAA CTTATGGTGA TAATATATAG 
    GCATGGAAGT GTTGGGTTGC GGGCGAGGCA NCGAGTATCA TCGATCATGT 
    CCTCAGTAGG AGCCGAAGCA ACGAAATCAT GAGATTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 126115 [Map]; Strand: c
      • AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
        Distance: -524; Region: promoter
      • AT4G00300.1 - [+] show detail - fringe-related protein
        Distance: -394; Region: promoter
    Flanking Genome Sequence: GT7755 - 5-prime edge 
    AAATCTCCTT TTTATATTTC CCAATTTATT AGAGTCAAAG CTGTTTTTGG 
    AACATTAATT CTCCACAAGA ATAAAACCAT AAGATGGAAA ACGACATTTC 
    AACATTAATG ATTACAGTAA TTAATAACTG AAAATAGCGT TTTTCACACA 
    AATCTATCAG TTTTTTTTAT TGTAGCCAAG TATTTGCAAA ATACTCCATC 
    TTAGGATGAT ACTTTGTCTA AAGTCAATAC CTTTTTTATT GGAGTACAAT 
    TCATGATAAA TATCTCTTCT ATTTTTAGTG GTTGTATATA TTTTGTCATT 
    TATAAGCAGA TTTAGGCACA TATTATTTTG TCCAAAACAT ATTGAATTTG 
    TAACCATATA TATTTGACAA ACACCGGGAT TAATTAATGA TTATATATAT 
    GTACGTAGTT AAGTAAATTC ACAAATTCAC AACTTTGTGT GTGTGTGTTT 
    CTTAATAAGG TTTTGCACCA AATTAATCAA ACTTGCATTA AGCCCAACAA 
    ATTTGAATCA TTAGGCCCAA AAGGCCCAGA AGTTGAAGGT GACTAAAACG 
    ACGTCGATGT TACCGAAT

AT4G00290.1

Model type
Protein coding
Short Description
Mechanosensitive ion channel protein
Computational Description
Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00300.1

Model type
Protein coding
Short Description
fringe-related protein
Computational Description
fringe-related protein; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT1G01570.1); Has 958 Blast hits to 946 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 151; Plants - 707; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04510.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 38
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 38 (CRK38); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: trichome, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (TAIR:AT4G04540.1); Has 124024 Blast hits to 122575 proteins in 4576 species: Archae - 110; Bacteria - 14079; Metazoa - 45461; Fungi - 10821; Plants - 34799; Viruses - 466; Other Eukaryotes - 18288 (source: NCBI BLink).
Link
InterPro Scan - TAIR