GT7805

CSHL Arabidopsis genetrap mutant lines

Original: GT7805

Phenotypes

Morphological phenotypes

Original description

  • tiny lethal
Anatomical entity
/structure development stage
Phenotypes
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT7805

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22410811 [Map]; Strand: w
      • AT5G55250.1 - [+] show detail - IAA carboxylmethyltransferase 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G55250.2 - [+] show detail - IAA carboxylmethyltransferase 1
        Distance: -130; Region: promoter
    Flanking Genome Sequence: GT7805 - 3-prime edge
    CCTAAGAGAA TGGGTTCTAA TGGAGACAGA CGTTGCTGTA TGTAACATGA 
    AGCTCGAGAG ACTTCTCAGC ATGAAAGGTG GCAAAGGACA AGACAGCTAC
    GCCAATAACT CTCAAGCTCA GGTCTGTACA TCTTATTTTT TTTTCTAATT
    ACTTAAAAGT TCCATTAAAA AGCCTTTTTT GTTTGTATGT TCTATATCTC
    GAGTGATAAA TTTGGGAATT TTAAGTGAAG GGACTGTGCT CAAGATTGGC
    AAGA

AT5G55250.1

Model type
Protein coding
Short Description
IAA carboxylmethyltransferase 1
Curator Summary
Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.
Computational Description
IAA carboxylmethyltransferase 1 (IAMT1); CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55250.2

Model type
Protein coding
Short Description
IAA carboxylmethyltransferase 1
Curator Summary
Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.
Computational Description
IAA carboxylmethyltransferase 1 (IAMT1); CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1); Has 921 Blast hits to 905 proteins in 124 species: Archae - 0; Bacteria - 69; Metazoa - 9; Fungi - 5; Plants - 719; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Link
InterPro Scan - TAIR