GT7832

CSHL Arabidopsis genetrap mutant lines

Original: GT7832

Phenotypes

Morphological phenotypes

Original description

  • seedling lethal
Anatomical entity
/structure development stage		 Phenotypes
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT7832

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25261909 [Map]; Strand: c
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3228; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 270; Region: intergenic
    Flanking Genome Sequence: GT7832 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATTC TGATTATGCT 
    TCAACTCAAC CATATGTGTG CGGAATTTGA ATATTTCTAC CATATATTTA 
    TCATTATAGC TCAGTGAAAC AATGGAATGG ATTACATATG CTTTCATAAA 
    GGTTGAGATA CCTATTTTTG CTCAATATCA AGATGTCAAA CCTTATGCTT 
    ATCCAACGAA ATTTGAAATA ATATTCGACA AGAAAAGTAT ATTAAATAAG 
    TTGTATTATT CTCCTTTAGT ATAATTATAG AACATATTCC TCTACACTTT 
    TGTGGGTCGT ACCTCTATAT TTTAAAGTTT AAATCATTTA GTATGGACCT 
    GTTTTTTTTT TTTTTGTAAA TGAAGGGACG TAAATGGTTC AATCGATTTT 
    TTTTTTAACT AAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25261911 [Map]; Strand: c
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3230; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 268; Region: intergenic
    Flanking Genome Sequence: GT7832 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATTCTG ATTATGCTTC 
    AACTCAACCA TATGTGTGCG GAATTTGAAT ATTACTACCA TATATTTATC 
    ATTATAGCTC AGTGAAACAA TGGAATGGAT TACATATGCT TTCATAAAGG 
    TTGAGATACC TATTTTTGCT CAATATCAAG ATGTCAAACC TTATGCTTAT 
    CCAACGAAAT TTGAAATAAT ATTCGACAAG AAAAGTATAT TAAATAAGTT 
    GTATTATTCT CCTTTAGTAT AATTATAGAA CATATTCCTC TACACTTTTG 
    TGGGTCGTAC CTCTATATTT TAAAGTTTAA ATCATTTAGT ATGGACCTGT 
    TTTTTTTTTT TTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25261803 [Map]; Strand: c
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3122; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 376; Region: intergenic
    Flanking Genome Sequence: GT7832 - 5-prime edge 
    CATAGACAGA ATTTTGAATA TAATACTCTT GTAGTGTTTG TGATCTCAAT 
    TAGACATGGT TTATGTTCAT TAGTGTGCTG GTTCAGTCGT GATCCCGGTA 
    AAGGAAGATC ATTTTCTTTG ATCAGTTGGT TTGGAAGTGA TTTATTTCGG 
    TTTGGGTAAA ACCAAGTTGT TAGGAAGTTT TAAATTTTTG TTTTCTGATA 
    TGCTTCTTTT AGTATCCAAT TTTCCTGTTT GTACAAATTT ACATATAATC 
    CTTAAGAGTA TGTAACTTAA ACTTACATCA ACTCCATTTN ACATATACTT 
    CATTTTTTCC AAATATCACA ATATTATAGG ACTACATATG GTACTGTCAA 
    CTGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25261803 [Map]; Strand: c
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3122; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 376; Region: intergenic
    Flanking Genome Sequence: GT7832 - 5-prime edge 
    CATAGACAGA ATTTTGAATA TAATACTCTT GTAGTGTTTG TGATCTCAAT 
    TAAACATGGT TTATGTTCAT TAGTGTGCTG GTTCAGTCGT GATCCCGGTA 
    AAGGAAGATC ATTTTCTTTG ATCAGTTGGT TTGGAAGTGA TTTATTTCGG 
    TTTGGGTAAA ACCAAGTTGT TAGGAAGTTT TAAATTTTTG TTTTCTGATA 
    TGCTTCTTTT AGTATCCAAT TTTCCTGTTT GTACAAATTT ACATATAATC 
    CTTAAGAGTA TGTAACTTAA ACTTACATCA ACTCCATTTT ACATATACTT 
    CATTTTTTCC AAATATCACA ATATTATAGG ACTAGACTGA AAATCTCATG 
    ATGTTGTGAA TCATAACTTA TGATGATGTA ATGACAAGTA ATGAGTGATG 
    CAATAGAACA AAGATACGCG GGACAGATAT ACTTTTGTTA ACTTTAAAAA 
    GTGGGTCTCA CTAAATAGAG ATATATAGGT GCCAAAGAAA TTGTCTTTGT 
    CACGCTTAGC TTATCTTGTG TAATTTATTC TTTCTCACAC CATTTTCGAT 
    GCCCTT

AT5G62940.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.
Computational Description
HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62950.3

Model type
Protein coding
Short Description
RNA polymerase II, Rpb4, core protein
Computational Description
RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1).
Link
InterPro Scan - TAIR