GT7837

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

stunted plants

Anatomical entity /structure development stage	Phenotypes
sporophyte vegetative stage (PO:0007134)	abnormal (PATO:0000460)

Original: GT7837

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 10316340 [Map]; Strand: w
  - AT5G28340.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon6 (CDS)
2. Chromosome: 5; Position: 10339543 [Map]; Strand: c
  - AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: GT7837 - 3-prime edge
```
CAAAATGTGG CGGTAGAGCT CAAGAGCGTG GTCGACGCTG CCTTGGTCGC 
AGTGTGCTTT GATGATGAGA TTGCAGGAGA GCATGTTTGG GAGAGTCTGA 
GACTCGTTGA AAAAGTTATC TAACAGAGAG ATGGCTTTTT TTGTACCGTT 
TGGCTCTGCA CATGGCGCCG ATTACGGAAT TGCAGATAAA GACGGTGTCT 
CTGCCCACTC GAAATCTTTC
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 10316348 [Map]; Strand: w
  - AT5G28340.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon6 (CDS)
2. Chromosome: 5; Position: 10339535 [Map]; Strand: c
  - AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: GT7837 - 3-prime edge
```
CCGTCGAGCA AAAGTGGCGG TAGAGCTCAA GAGCGTGGTC GACGCTGCCT 
TGGTCGCAGT GTGCTTTGAT GATGAGATTG CAGGAGAGCA TGTTTGGGAG 
AGTCTGAGAC TCGTTGAAAA AGTTATCGAA CAGAGAGATG GTTTTGTGGT 
GCCGTTTGGC TCTGCACATG GCGCCGATTA CGGCTTTGCA GATAAAGACG 
GCGTCTCTGT CCACTCGAAA TCTTTCCGAG ACAGCGAGGC GCGAGAGCT
```
5 prime edge [+] show sequence
1. Chromosome: 5; Position: 10316567 [Map]; Strand: w
  - AT5G28340.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon6 (CDS)
2. Chromosome: 5; Position: 10339316 [Map]; Strand: c
  - AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: GT7837 - 5-prime edge
```
TGAGCCGCTG TGATTTCGCC GTATACGACA TTCTGATTCG AGGGTTTCTG 
GATAAAGGCA AATTCGTAAG GGCTACATAT GGTACTGTCA ACTG
```

AT5G28340.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28380.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR