GT7845

CSHL Arabidopsis genetrap mutant lines

Original: GT7845

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT7845

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7251167 [Map]; Strand: c
      • AT1G20840.1 - [+] show detail - tonoplast monosaccharide transporter1
        Distance: -3024; Region: intergenic
      • AT1G20850.1 - [+] show detail - xylem cysteine peptidase 2
        Distance: -1007; Region: intergenic
    Flanking Genome Sequence: GT7845 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACCTG TAAAGTTAGA 
    ACCAGTGAGT TTTCAACTGT AACTTTAACA TGATTCATGT TTGAAATGAA 
    TCCACTTTAT GAAAAATATG GTGTTAATTT AGATCATACT TCGTAGTGGT 
    TGGTGGGTCA TCATTATAAA AATCAAGTTT TTACGTATTA GGTTCTTAAA 
    TTTTATATAT CTTATTCAAC AATTAGCTGA TTAAAAACTA AGTAAAACGA 
    AGATCCTTAT CCTCCTGACA TTGTTATCAG AAATCTTGGT GGATTGACAG 
    GTCAAACTTT GTTCTTTACA GAATAAATAT CTTATTAAAA AAACAGAAAT 
    ATACTTCACC GTAATCTCAT GTTTTGTGAA TTTTATATTG TCTCATTAAG 
    AATTATGTTT AAACAATTTA GAACAGTGAA CAAAAGAAGA GCTAATTATA 
    ATCAACTAAA CTTCAACATT CATTCATACC ATAAAAGGTT AGTGATTATG 
    GGCCGCAAAT CCATGATTTG TATATTGTTC AATTAAGATT GGTGATCAAA 
    ACATTTTTCA TCAGTTAATT ACATAGTTGG CCCACTTTTG GGCTTCCTTA 
    TTGTTGAGGT TGGCATTTTA TCATTGAGGC CTTCCTTAAA TGATTACCTC 
    TGACCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7251256 [Map]; Strand: c
      • AT1G20850.1 - [+] show detail - xylem cysteine peptidase 2
        Distance: -918; Region: promoter
    Flanking Genome Sequence: GT7845 - 3-prime edge 
    TTTGAAATGA ATCCACTTTA TGAAAAATAT GGTGTTAATT TAGATCATAC 
    TTCGTAGTGG TTGGTGGGTC ATCATTATAA AAATCAAGTT TTTACGTATT 
    AGGTTCTTAA ATTTTATATA TCTTATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7251074 [Map]; Strand: c
      • AT1G20840.1 - [+] show detail - tonoplast monosaccharide transporter1
        Distance: -2931; Region: intergenic
      • AT1G20850.1 - [+] show detail - xylem cysteine peptidase 2
        Distance: -1100; Region: intergenic
    Flanking Genome Sequence: GT7845 - 5-prime edge 
    TACTTGACTG CTTGTACAAA AAAAAATAAA TGATTGTTAT TTCTTATGCA 
    GGGGAAAAAA TCAACAAAAT ATATAAGAAT GAAAATAAAA TGATAATAAA 
    ACATATCATA AGATCCGTTT GAGGTGGAGC CACGTGGTCG GAAATGCTCA 
    AATGATTTGG GAGCACGAAC TCTATCAAGA AAAAGACCAT TGTCATATTT 
    TTCTACATAT GGTACTGTCA ACTGG

AT1G20840.1

Model type
Protein coding
Short Description
tonoplast monosaccharide transporter1
Curator Summary
The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.
Computational Description
tonoplast monosaccharide transporter1 (TMT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter2 (TAIR:AT4G35300.4); Has 47782 Blast hits to 35006 proteins in 2411 species: Archae - 763; Bacteria - 22324; Metazoa - 7189; Fungi - 11789; Plants - 3723; Viruses - 0; Other Eukaryotes - 1994 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20850.1

Model type
Protein coding
Short Description
xylem cysteine peptidase 2
Computational Description
xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: cysteine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: xylem cysteine peptidase 1 (TAIR:AT4G35350.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink).
Link
InterPro Scan - TAIR