GT7857

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT7857

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 426084 [Map]; Strand: c
- AT2G01918.1 - [+] show detail - PsbQ-like 3
  Distance: -371; Region: promoter
- AT2G01920.1 - [+] show detail - ENTH/VHS/GAT family protein
  Distance: 0; Region: exon1 (CDS)

GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTT GTGGAGACGC 
GTCTCCGGAG CTATAAAGGA CAAACTCAGT CTCATCACCG CGACGGATGA 
AAAATTCACG GCGGCGGTTA TCAAAGCGAC GAGTCATAAC GATGTCTCAA 
TGGACATCGA AAACGTTCAA TTCATCTATA GATACATACA GAGCAACCCT 
TCCAGTTTCA AACCAATTAT ACGCGCCGTC TCGTTACGCG TGGAACACAC 
GCGTAACTGG ACGGTGGCTT TGAAATGTTT GATGTTATTG CACGGCTTGT 
TCTTCTCCGG AATCATGACC GTCGATTCGA TCGGACGGTT ACCGTTCGAT 
CTTTCGGGTT TCGGGAGAAG GAAATCTCGG TTTAGTAGAA CCGGTCGGTT 
TAACATCTTC GTTCG

3 prime edge [+] show sequence

Chromosome: 2; Position: 426085 [Map]; Strand: c
- AT2G01918.1 - [+] show detail - PsbQ-like 3
  Distance: -372; Region: promoter
- AT2G01920.1 - [+] show detail - ENTH/VHS/GAT family protein
  Distance: 0; Region: exon1 (CDS)

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTTG TGGAGACGCG 
TCTCCGGAGC TATAAAGGAC AAACTCAGTC TCATCACCGC GACGGATGAA 
AAATTCACGG CGGCGGTTAT CAAAGCGACG AGTCATAACG ATGTCTCAAT 
GGACATCGAA AACGTTCAAT TCATCTATAG ATACATACAG AGCAACCCTT 
CCAGTTTCAA ACCAATTATA CGCGCCGTCT CGTTACGCGT GGAACACACG 
CGTAACTGGA CGGTGGCTTT GAAATGTTTG ATGTTATTGC ACGGCTTGTT 
CTTCTCCGGA ATCATGACCG TCGATTCGAT CGGACGGTTA CCGTTCGATC 
TTTCGGGTTT CGGGAGAAGG AAATCTCGGT TTAGTAGAAC CGGTCGGTTT 
AACATCTTCG TTCGCGCTTA TTTCATC

5 prime edge [+] show sequence

Chromosome: 2; Position: 425969 [Map]; Strand: c
- AT2G01918.1 - [+] show detail - PsbQ-like 3
  Distance: -256; Region: promoter
- AT2G01920.1 - [+] show detail - ENTH/VHS/GAT family protein
  Distance: -83; Region: promoter

AGTTGTTGTT GTTTTGTAAT TATTCTACGA AGAGATTTGG TTATGATTTC 
AATTTAGACT TTTAGTTGTT GTAACAAAAT TAGTTTCTTA CTTTGAAACA 
TTTTTTGTCA AAACGCAAAT TGAGAGTTTT TAGTATCTTA CGTGTTACGT 
TATGTATCTG TAAATTACAA TTAGCAGCTT TGAGATAATT CATATAACAA 
ACAAAAAAAA TGAAAATTTG GCGGGTAGTT GTAAGTGTTA TCTGCACTAG 
TTGACACGTG TTATCACTAG TGGCCGTTGG ATTAATCTCT GGTTCTTATC 
CTTGTGATGA GGTTGGTTTG TTCAATGGTG CAGCTACTTT GTTTCATTGA 
AACGTGAATA CATGGCGATT TCAAAGCCAC CACCACTACA TTTCACTTTC 
TTTCACAATC AAGATTCTTC AATTGATACA TCGGATTCAA ACTTAGCACT 
TTCTATTGAT ACATCTAGAA GACG

5 prime edge [+] show sequence

Chromosome: 2; Position: 425991 [Map]; Strand: c
- AT2G01918.1 - [+] show detail - PsbQ-like 3
  Distance: -278; Region: promoter
- AT2G01920.1 - [+] show detail - ENTH/VHS/GAT family protein
  Distance: -61; Region: promoter

TTTCGTCTCA TGACGATGTT TTAGTTGTTG ATGTTTTGTA ATTATTCTAC 
GAAGATGATT TGGTTATGAT TTCAATTTAG ACTTTTAGTT GTTGTAACAA 
AATTAGTTTC TTACTTTGAA ACATTTTTTG TCAAAACGCA AATTGAGAGT 
TTTTAGTATC TTACGTGTTA CGTTATGTAT CTGTAAATTA CAATTAGCAG 
CTTTGAGATA ATTCATATAA CAAACAAAAA AAATGAAAAT TTGGCGGGTA 
GTTGTAAGTG TTATCTGCAC TAGTTGACAC GTGTTATCAC TAGTGGCCGT 
TGGATTAATC TCTGGTTCTT ATCCTTGTGA TGAGGTTGGT TTGTTCAATG 
GTGCAGCTAC TTTGTTTCAT TGAAACGTGA ATACATGGCG ATTTCAAAGC 
CACCACCACT ACATTTCACT TTCTTTCACA ATCAAGATTC TTCAATTGAT 
ACATCGGATT CAAACTTAGC ACTTTCTATT GATACATCTA GAAGACGAAG 
AGACGTTTTG CTCACAATTT CAGGTACACT AATCCCTCAA CTG

AT2G01918.1

Model type: Protein coding
Short Description: PsbQ-like 3
Curator Summary: Encode a protein homologous to each PQL protein. Mutational analysis indicates that PQL3 is also required for NDH activity.
Computational Description: PsbQ-like 3 (PQL3); CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01920.1

Model type: Protein coding
Short Description: ENTH/VHS/GAT family protein
Computational Description: ENTH/VHS/GAT family protein; FUNCTIONS IN: phospholipid binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT1G14686.1); Has 316 Blast hits to 316 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR