GT79

CSHL Arabidopsis genetrap mutant lines

Original: GT79

Phenotypes

Morphological phenotypes

Original description

  • 1 rootless 3 small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
root (PO:0009005)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT79

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19084518 [Map]; Strand: w
      • AT2G46494.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -707; Region: promoter
      • AT2G46495.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT79 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCAC AAGTGCTTAA GATTATACTC 
    CTGAGCATAA TTGGACCGCT CACGATCTTT GCTACTTGTA TTGCAGTCGG 
    AGTTTGCACC TCCGAAAGAT TCGCTTCCCT GATACAACGC AACGTGGCTA 
    TCGCCGCCTT GCAGCCAAAC GAGGTTATAG TCACGACGGG TCTTGATGAA 
    TCTATAATAG AATCATATAA GAAAACGGAA TTAGGAGAGA GTAGAAGATT 
    ACCGGGAAAT AATGATGATA TTGTTTGCCC TATTTGTTTA TCGGAGTATG 
    CTAGCAAAGA GACCGTGCGG TGCATACCAG AATGTGATCA TTGCTTCCAC 
    AGTGAATGTA TAGATGTGTG GCTTAAGATT CATGGTTCGT GTCCTCTTTG 
    TCGGAATTCT CCTTCTCCGG CTCGTCAAGC TGTCTAAGAT GTTTAGACTT 
    ATAAACATAA ACCATTTATG ATTTTTTTTA GAAAATGTTA AGAATGGTAA 
    TTTGTTCATT TTCAAAAATT TGTTAGTGG

AT2G46494.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46495.1).
Link
InterPro Scan - TAIR

AT2G46495.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25410.1); Has 16199 Blast hits to 8554 proteins in 281 species: Archae - 0; Bacteria - 0; Metazoa - 3863; Fungi - 941; Plants - 9494; Viruses - 61; Other Eukaryotes - 1840 (source: NCBI BLink).
Link
InterPro Scan - TAIR