GT7920

CSHL Arabidopsis genetrap mutant lines

Original: GT7920

Phenotypes

Morphological phenotypes

Original description

  • small plants
  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7920

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23979050 [Map]; Strand: w
      • AT5G59460.1 - [+] show detail - scarecrow-like transcription factor 11 (SCL11)
        Distance: -651; Region: promoter
      • AT5G59470.1 - [+] show detail - Mannose-P-dolichol utilization defect 1 protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G59470.2 - [+] show detail - Mannose-P-dolichol utilization defect 1 protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT7920 - 3-prime edge 
    GTTTTCATCC CTAGTTGGTG CTATAGCAAA TAAAGAATGC TTTGACCCAA 
    GTTGTTACAG AGAGAGGTTG TGAGAAATAG TAGATACAAG AGACCAAGAT 
    TAAAGCTTGG ATCAAAAGAA AAGCTAATTC ACCAAAAGCT GAAAAAGGAA 
    GGTCTTTGTT AAGACAATAA GCAAGTGAGA TTGTGTAACC AATCACTTCA 
    AGTTCAAATG CTACAACACT TAGGCCTTTT ACACTCTTGT TGTCCACGAT 
    TTTCATTATC TACAACAACA AAAGTTCAAT TCAGTTTAGA GATATTAGGG 
    TTGAGAAATC ATAGTGATTG ACTGATTGAT TGAATTAACC AACCTGAGGA 
    AGCTTAACGG TCATTGAAGC AGCGACGAGG AAGTAACCGA GTAGCTTTGA 
    AATGAGAGGA AGAAGACAAT CTTTCGCCGT GAACTCACCG TTACGGAGAG 
    ATCCGATTGC GCAGCTCAAG TCGATTC

AT5G59460.1

Model type
Protein coding
Short Description
scarecrow-like transcription factor 11 (SCL11)
Computational Description
scarecrow-like transcription factor 11 (SCL11); CONTAINS InterPro DOMAIN/s: M-phase phosphoprotein 6 (InterPro:IPR019324); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59470.1

Model type
Protein coding
Short Description
Mannose-P-dolichol utilization defect 1 protein
Computational Description
Mannose-P-dolichol utilization defect 1 protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Mannose-P-dolichol utilization defect 1 protein (InterPro:IPR016817); BEST Arabidopsis thaliana protein match is: Mannose-P-dolichol utilization defect 1 protein (TAIR:AT4G07390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59470.2

Model type
Protein coding
Short Description
Mannose-P-dolichol utilization defect 1 protein
Computational Description
Mannose-P-dolichol utilization defect 1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: Mannose-P-dolichol utilization defect 1 protein (TAIR:AT4G07390.1).
Link
InterPro Scan - TAIR