GT7964

CSHL Arabidopsis genetrap mutant lines

Original: GT7964

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7964

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1474834 [Map]; Strand: w
      • AT4G03350.1 - [+] show detail - ubiquitin family protein
        Distance: -325; Region: promoter
    Flanking Genome Sequence: GT7964 - 3-prime edge 
    AAATAAGTTC TTGTTGAGTT ACTATAAGCT CTGTGTACAT TCTAATTCAC 
    ATTTCTTTTA CTACTTTAAT GTATCACTAG TACAAAGATC AAATGTTGAA 
    TCTTTATTGA CAAAGCAGAG CAAAAGACAG TAAAGTTTCT TGCTTTATTC 
    AAAAACTAAA ACCAAAGAAA AATCACATTA CTAATTTGCT TATAAACACT 
    CTGCGACTAA TAACCGTTGG ATCATATCAG TAAGGAGAGA AATCACGAAA 
    TTAGCAAACT CTCGTCACAA ATCATCAGTT TCTCTTTCTC TCTTCCTCAT 
    TTAGTCTCTC TCCACTGATC TTGAAACTAC AACGATGAAC GTGTACATCG 
    ATACTGAGAC TGGCTCATCG TTCTCCATTA CTATTGATTT CGGCGAAACA 
    GTGTTACAGA TAAAAGAGAA GATCGAGAAG TCTCAAGGTA TCCCTGTTTC 
    GAAACAAATC CTTTACTTGG AT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1475040 [Map]; Strand: w
      • AT4G03350.1 - [+] show detail - ubiquitin family protein
        Distance: -531; Region: promoter
      • AT4G03360.1 - [+] show detail - Ubiquitin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT7964 - 5-prime edge 
    TAAAACCAAT AAGAAAAAAG AATTTAAGAT CGATTAGTGA TCAAACGTTC 
    AACCACTTGG GAAATCTGAA TCGTATCACC GTAAGCAACA CCGTTCGTCA 
    AGAATGACTG ATCTTCGTGT AATACAGCCT GCTTATGCTT GTGTATTAAG 
    TAATACATTC CTTGAGGCAG ATTTAACTCA CCCCTCTCTT GCATCTTAAC 
    CAGCTCTTTC CTCAGTTCTT CAACGTTATC ATCTGCTGTA ACCTCTACTT 
    GAATCATCCT GGTATATCCA TATGGCTGCA CCATTACTAT CATT

AT4G03350.1

Model type
Protein coding
Short Description
ubiquitin family protein
Computational Description
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: 7SL RNA1 (TAIR:AT4G02970.1); Has 8392 Blast hits to 3833 proteins in 622 species: Archae - 0; Bacteria - 4; Metazoa - 3676; Fungi - 1041; Plants - 2216; Viruses - 160; Other Eukaryotes - 1295 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03360.1

Model type
Protein coding
Short Description
Ubiquitin family protein
Computational Description
Ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G02950.1); Has 305 Blast hits to 295 proteins in 81 species: Archae - 0; Bacteria - 3; Metazoa - 39; Fungi - 37; Plants - 169; Viruses - 17; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR