GT7976

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT7976

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 21963394 [Map]; Strand: c
- AT5G54130.2 - [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
  Distance: 0; Region: exon3 (CDS)
- AT5G54130.3 - [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
  Distance: 0; Region: exon3 (CDS)
- AT5G54130.4 - [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
  Distance: 0; Region: exon3 (CDS)

TACTTGGAGA CGCTGGTTAT CTAAGTTACA AGCTTGGTCG TACTAATAAT 
CGTGGTGATG GTATATATAA ACATTTCTGT GAATCTTCTT CTTTTTTGGC 
TTTTTGATGT TTGCTTTGTT CATTCTTTTA ACCATTCATT GTGTTTTAAT 
AGGTTTGCTT ACGGCTGTTC ATAAGGATTA TTTTAGAGTT GTGAACTCGA 
GGGATTTGCT TTTTAATGAT TGTGGTGATA GAGTTGCTCA GTTGCTACAT 
GTAGAATTAG TTCCTCCTTA CTCTCAGTAT GATGCTCATC AAGAAGTTTT 
GATTGTCAAT ACTCATTTGT TGTTTCCTCA TGATTCAACA TTGTCCATAG 
TAAGATTGCA GCAGGTAGAG TTCTGTCTTA AATCTTAGAC TAACTCCACT 
ATTATTGTGA TGATTTTGCA TATTTCTAAA CAAAGATTTT GTTTTGATAG 
GTATATAAGA TTCTTCAGTA TGTAGAATCT TACCAGAAGG AAGT

AT5G54130.2

Model type: Protein coding
Short Description: Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description: Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G54130.3

Model type: Protein coding
Short Description: Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description: Calcium-binding endonuclease/exonuclease/phosphatase family; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G54130.4

Model type: Protein coding
Short Description: Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description: Calcium-binding endonuclease/exonuclease/phosphatase family; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR