GT8060

CSHL Arabidopsis genetrap mutant lines

Original: GT8060

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8060

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 172439 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT8060 - 3-prime edge
    TAGTCTTGAG CAGAGTCCCA AGTGGAGTAC TTGAGGATGT TATAGATGTT 
    GGATACAATG TCTCTTGTGT AAACACTGGG ATCTGGTAGG GTCTGTGTTT
    TCACAAGTTT GGGTTTTTGG GAGAATCGCT TGGAGTTGGT GGGTTTTAGA
    CGAGGAAGAG AGTGAAGTAG CTTGACGGAG CTCCGGCGAT TGGAGAATTG
    GATTGGGGTA TTGCGGAAGA TGCTAGAGAA GCGCATGAAG CTTTGCCCAG
    AGAGATAACC AATTCTAAAC TCCAACCTTG CAGTGTATTA GAAAGCTTTG
    TTTGAATAAG ACGCCGTTTT TTATTCAAGT AAAATTTCAA AAATCTAGAT
    TCAAAGAAAA AAATTCAAAA ATCTATGCAA GTCTTTAACC ACAATTATAA
    AGTTAGGGTT TATAATTTGA CTTAGGACCT GGGCGTTCGG GTATTCGCTT
    CGGTTTTAGT TGGATTCCGA TTCCTTCGGT TTTTGAGTGT AGAATCCATA
    TATGAACCGA AACAGTTTCA GTTTGGTACG GGTTTGGTTC T
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 338320 [Map]; Strand: w
      • AT2G01780.1 - [+] show detail - Curculin-like (mannose-binding) lectin family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT8060 - 5-prime edge
    TTCATACATT TTGGTGGTAT ACAGAAAGAG GTCAATGATA GAACCAGTCC 
    TATACAGTCG GCCCCCATAG TTAGAAACGA AAAGCTGAGG GAAGCTAGAG
    GCAACATATT CCTCTCCTCA TCTTTTAGGT TCGAGGTTTA GCGTGTAACT
    CGATTTGGAC GGATTATCAG GGGTTTCCCA CGCCACCAAA TATTGATTGA
    CGCCCCAATG AAAATTCCAA CCCAATGCCA TTTTTGGAAG TAAGTATCCG
    TCGGGAAATG GAAGCTTTGC CATAAGAAAC CTCGCTGTGT CGTTATCCCC
    TGTGTTCTTG ATAGCGAAGT TTCCGTCAGC AAGCAGTTTT TTTTTTAA

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01780.1

Model type
Protein coding
Short Description
Curculin-like (mannose-binding) lectin family protein
Computational Description
Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: receptor kinase 3 (TAIR:AT4G21380.1); Has 1787 Blast hits to 1759 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1787; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR