GT8083

CSHL Arabidopsis genetrap mutant lines

Original: GT8083

Phenotypes

Morphological phenotypes

Original description

  • shoot meristem-less plant
Anatomical entity
/structure development stage		 Phenotypes
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT8083

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1585546 [Map]; Strand: w
      • AT3G05480.2 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
      • AT3G05480.3 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
      • AT3G05480.1 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8083 - 3-prime edge 
    GGTGACGAAA ATAACTTATA AACCTTTATT TGCAAGAGTC GCACCAAATA 
    CTTGCCAATC CTTAAAATTA GGGTTACGGA GGAACCGATA AAGCATATAA 
    AGGAGAGTAC CTGTGTCGGC GAAGCTTGGA CAACGAGCTC GTTACCGACG 
    CGTGCGAGGC AGATTATAGA CCTAGACAAG GTCTTGAGCG CATTGCCACT 
    GATACTCAAC TTCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1585697 [Map]; Strand: w
      • AT3G05480.2 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
      • AT3G05480.3 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
      • AT3G05480.1 - [+] show detail - cell cycle checkpoint control protein family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8083 - 5-prime edge 
    CGATGATTAC TTTATCGCCG TTAGTTTACC CAAAATCTTG TGTCCAAGCA 
    GTTTGGTTCA TCGTTTTCTG GGCAAATGCT TTAAGAGGCT TAGGAACGCT 
    GTGTTGATTG AATTTGTAGT TTATCACCTC TTTTAGCTGA ACAATTCGTC 
    ACATTACTCT TATTCGCCTT GTTAGATCTA ATTTCTTTTG TTTTGTGCAT 
    AACTTTGCAG CTGGCATTGC ACACTTTGAA TGCTTCACGT TCTGCCTATC 
    AGTGTATCAC ATTTCAGTCA AGTTTCTTTG ATGTATATAC TGTTTCTTGT 
    CTTACGACTA ATTTCAGTGT ACTTTTGAAG GTATTTTACT GTTATTCTGA 
    AATTTTTAGC AATGAAATTC ATTGGTGTAA GTAGTTGTTG CTGATATTAC 
    TTTTTTACCA GGCTGTTTGT TCTGTTCTTA GAACCCCTCT CGCGAGCATT 
    GATCATATGA GTGTGCAGTT GCCAGATCAT GATGCATCTA AGGTCAAATG 
    GACTTTGCAG TGTTACAGTG GTAAAATCTA TATTTCCTTG TTCTTACACA 
    TTGTTTGCTC TTGTCTGCAA TTATCACATT CTCTAGTAAC TTTGTGTAGC 
    CGTCCTGTGT AAAACCTGGA TGTGGCATGT TTCAGACCTG TTCATAATAG 
    TTTAATATTA TCTGAAACTG TTAACT

AT3G05480.1

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05480.2

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05480.3

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552).
Link
InterPro Scan - TAIR