GT8117

CSHL Arabidopsis genetrap mutant lines

Original: GT8117

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8117

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8740680 [Map]; Strand: w
      • AT4G15310.1 - [+] show detail - cytochrome P450, family 702, subfamily A, polypeptide 3
        Distance: 633; Region: intergenic
      • AT4G15320.1 - [+] show detail - cellulose synthase-like B6
        Distance: 1959; Region: intergenic
    Flanking Genome Sequence: GT8117 - 5-prime edge 
    AATAATATTG TAATTGAGAG TGTCTTTAGA TCTTGAGATT TCATTCTCAA 
    TTATAATATT ATTCTTTCTA ATTATATATT TCTTTTATTT GAGAAAGACA 
    CCCAACAATA TATGTGTTAT GGAGATGCTC TAATGAACCG TGGATCTTCG 
    AAAGTGGTCC AATTAACTAG TTTATATCAA CTNTAGATTT GATACCAGTT 
    TCCCCCTATA ACTAATGGGA TAAGTAAACA TAAAATGTAA TGAACACAAA 
    CTGATTTACG TTGTTTGTGT ACCAAGGTCT ATTTGAAAGG AAAACCGCTT 
    TTATTAAGAA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8740605 [Map]; Strand: w
      • AT4G15310.1 - [+] show detail - cytochrome P450, family 702, subfamily A, polypeptide 3
        Distance: 558; Region: intergenic
      • AT4G15320.1 - [+] show detail - cellulose synthase-like B6
        Distance: 2034; Region: intergenic
    Flanking Genome Sequence: GT8117 - 5-prime edge 
    TGGTTTAGAG CATCTCCATT AGACAAATCT TTAAAGTGTC TTCCCCAAAT 
    AAACAAATAT GTTTTAGTCA AAAATAATAA TATTGTAATT GAGAGTGTCT 
    TTAGATCTTG AGATTTCATT CTCAATTATA ATATTATTCT TTCTAATTAT 
    ATATTTCTTT TATTTGAGAA AGACACCCAA CAATATATGT GTGATGGAGA 
    TGCTCTAATG AACCGTGGAT CTTCGAAAGT GGTCCAATTA ACTAGTTTAT 
    ATCAACTCTA GATTTGATAC CAGTTTATTA TATAACTAAT GGGATAAGTA 
    AACATAAAAT GTAATGAACA CAAACTGATT TACGTTGTTC GTGTACCAAG 
    GTCTATTTGA AAGGAAAACC GATTTTATTA AGAAATTAAC CCACATTGTT 
    ATACTATTTT CCCACCGAGA AAACAACAAA TAAAACTGTT AAAAACGCAG 
    CTTTAGAAAG AGTAGACAAT GGGATGCCAT ATTTTCCATG CTCAAACAAA 
    CCCTTTA

AT4G15310.1

Model type
Protein coding
Short Description
cytochrome P450, family 702, subfamily A, polypeptide 3
Curator Summary
a member of the cytochrome P450 gene family. molecular function unknown.
Computational Description
"cytochrome P450, family 702, subfamily A, polypeptide 3" (CYP702A3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 702, subfamily A, polypeptide 2 (TAIR:AT4G15300.1); Has 23641 Blast hits to 23593 proteins in 1422 species: Archae - 48; Bacteria - 3254; Metazoa - 9876; Fungi - 3216; Plants - 6409; Viruses - 3; Other Eukaryotes - 835 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G15320.1

Model type
Protein coding
Short Description
cellulose synthase-like B6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like B6 (CSLB06); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT4G15290.1); Has 2450 Blast hits to 2218 proteins in 444 species: Archae - 1; Bacteria - 809; Metazoa - 0; Fungi - 0; Plants - 1618; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR