GT8137

CSHL Arabidopsis genetrap mutant lines

Original: GT8137

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8137

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18964544 [Map]; Strand: w
      • AT3G51060.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT8137 - 3-prime edge
    CAACAACCAC CACCCATAAC CACCACTCAC CCACTAACCA ATCAAGAAAA 
    TGGAACAAAA CCCAAAACCA AAGATCCTAT GTTTTGTAGT TCTATACACT
    CTAACTTTCT CACTCTAGAT CTTAGAGGAT TTCTAGGGTT TTTAGGTTGA
    ATTCATTCTC TGGGTTTGTA GTGTATTGAA GTTGGAATAG CTTTTTGAGA
    CTCTGATGAA AAAGCAAAAC TTGTTTGTCG GTACGAGAGA GAGAGTATTT
    AAGAAACACA CAGAGATATG TAAGAAGGAA GAAGAAGAAG AGAGATTTAA
    ATCATCTTTC TTGCGCTCTG CAACGCCGCC ATGACCTTAT TAATCTCTCT
    CTCTCTCTCT CTCTTCTGCT CCTCTAATAT AATTCTCTGT CTCCTCTCAT
    CTCTTCTTCA TTTGTGTGTT TCTTTGTTGT GTTTTTCCAG ATTTTGCAAA
    AATATAATTG TGTTTCTCTC AATTTTTGGT GTCACAAAAT GAAAACAAT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18964708 [Map]; Strand: w
      • AT3G51060.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT8137 - 5-prime edge
    GAGGAGGAGG CGGAGGTGGA GGTAACAACC AAAAAAACAC CGGAGCAACA 
    CAAATCCTCC TCCGCCTGTA TCAGAAGCTT GGCTCTGGTA TAGAAACCCT
    AACGTTAACG CAAACGCAAA CACAAACGTT AACGCAAACG CTCCTTCTTC
    GTCAAACGCT GCTTTAGGAA CACTGGAGTT ATGGCAAAAC CTCTATCAGC
    AAGAGATCAT GTTTCAGCAT CAGCAACATC AGCAAAGGTT GGATCTTTAC
    TCTTCCGCCG CAGGTTTAGG TGTTGGACCA AGTAATCATA ACCAATTCGA
    TATCTCCGGC GAAACTTCAA CCGCCGGCGC CGGAAGAGCT GCGGCGATGA
    TGATGATTCG TAGTGGTGGT AGCGGAGGAG GAGGAGGAAG TGGTGGTGTG
    AGCTGTCAAG ACTGTGGGAA TCAAGCGAAG AAAGATTGTT CTCACATGAG
    GTGTAGAACT TGTTGTAAAA GCCGTGGCTT CGAGTGTTCT ACTCACGTGA
    GAAGCACGTG GGTCCCTGCT GCTAAACGCC GTGAGAGACA ACAGCAATTA
    GCTACGGTCC AGCCTCAAAC TCAGCTGCCT CGCGGGGAGA GCGTTCCTAA
    ACGCCACCGT GAAAATTTAC CGGCAACT

AT3G51060.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC)
Computational Description
STYLISH 1 (STY1); FUNCTIONS IN: protein heterodimerization activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G66350.1); Has 244 Blast hits to 244 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 9; Plants - 179; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR