GT82

CSHL Arabidopsis genetrap mutant lines

Original: GT82

Phenotypes

Morphological phenotypes

Original description

  • small plant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT82

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6811185 [Map]; Strand: c
      • AT5G20170.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -387; Region: promoter
      • AT5G20180.1 - [+] show detail - Ribosomal protein L36
        Distance: 0; Region: intron1 (5UTR)
      • AT5G20180.2 - [+] show detail - Ribosomal protein L36
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: GT82 - 3-prime edge 
    TTTTGCATCC CTAAACTAAG GATTGCAGTT GTTCTGGTAG ATTAAGTAGA 
    AATGATATGT TTAGAGGATA CAATCCTTAG TTTTGAATCT TAAAGTTGAA 
    TACTTTGAAG AGTTCTCTTT CATTTTCATC TCTCTCGA

AT5G20170.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Computational Description
RNA polymerase II transcription mediators; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med17 (InterPro:IPR019313); Has 84 Blast hits to 82 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 6; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20180.1

Model type
Protein coding
Short Description
Ribosomal protein L36
Computational Description
Ribosomal protein L36; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36 (InterPro:IPR000473); Has 4494 Blast hits to 4494 proteins in 2031 species: Archae - 0; Bacteria - 3621; Metazoa - 52; Fungi - 76; Plants - 607; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20180.2

Model type
Protein coding
Short Description
Ribosomal protein L36
Computational Description
Ribosomal protein L36; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36 (InterPro:IPR000473); Has 4494 Blast hits to 4494 proteins in 2031 species: Archae - 0; Bacteria - 3621; Metazoa - 52; Fungi - 76; Plants - 607; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR