GT8258

CSHL Arabidopsis genetrap mutant lines

Original: GT8258

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8258

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11175537 [Map]; Strand: c
      • AT1G31258.1 - [+] show detail - other RNA
        Distance: 3702; Region: intergenic
      • AT1G31260.1 - [+] show detail - zinc transporter 10 precursor
        Distance: 22; Region: intergenic
    Flanking Genome Sequence: GT8258 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACAT CTATTTGTAA 
    GCTCCGCTCT TAACTTAAAC ATCATCAAGC CCACTTGGCC ATGACGGACA 
    TGCCACCAGC ACCAAGCAAA ACGGCAGCAT ATGACTTTAA TTGAAGCTTG 
    ATGCTCCTTT GCATTTTTTG ACCCATAAAA TCGGCAGCTA GAAGGTCAAC 
    TAAAGCCATG TAGATGAGTA GTCCTGCCGA GGAAGCGTTG AGCAACCCAA 
    CTGTTATAAG CGATTCAGGG CTATTCTCTT TGTATGTTTT AGATAGTGCC 
    ATCCCTAGAA CCACTCCAAA AGGCGTCGTC ACCGCAAAAA AGAAAGCCCT 
    CACCGCCTTT TTAACCCACC CGTACTCCGC CTACATGTAT TATCAAGTTC 
    TCATCATATA TATGATTTCA TATCAATTCA TTCAAAAGCA CGACGTTTTT 
    CAAGAAATCA AACCATGTGG AACTTTTTGT GTTTAAACCA AGAAAAGGAA 
    GAAAAAAAAA TCATGTGGAA TTTAGTTTAT AGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11175561 [Map]; Strand: c
      • AT1G31260.1 - [+] show detail - zinc transporter 10 precursor
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT8258 - 3-prime edge 
    GTTTTCATCC CTACATCTAT TTGTAAGCTC CGCTCTTAAC TTAAACATCA 
    TCAAGCCCAC TTGGCCATGA CGGACATGCC ACCAGCACCA AGCAAAACGG 
    CAGCATATGA CTTTAATTGA AGCTTGATGC TCCTTTGCAT TTTTTGACCC 
    ATAAAATCGG CAGCTAGAAG GTCAACTAAA GCCATGTAGA TGAGTAGTCC 
    TGCCGAGGAA GCGTTGAGCA ACCCAACTGT TATAAGCGAT TCAGGGCTAT 
    TCTCTTTGTA TGTTTTAGAT AGTGCCATCC CTAGAACCAC TCCAAAAGGC 
    GTCGTCACCG CAAAAAAGAA AGCCCTCACC GCCTTTTTAA CCCACCCGTA 
    CTCCGCCTAC ATGTATTATC AAGTTCTCAT CATATATATG ATTTCATATC 
    AATTCATTCA AAAGCACGAC GTTTTTCAAG AAATCAAACC ATGTGGAACT 
    TTTTGTGTTT AAACCAAGAA AAGGAAGAAA AAAAAATCAT GTGGAATTTA 
    GTTTATAGAA CCAGAATGGA TGGGAGTAAT TAC

AT1G31258.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT1G31260.1

Model type
Protein coding
Short Description
zinc transporter 10 precursor
Curator Summary
member of Fe(II) transporter isolog family
Computational Description
zinc transporter 10 precursor (ZIP10); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 1726 Blast hits to 1578 proteins in 260 species: Archae - 0; Bacteria - 87; Metazoa - 331; Fungi - 622; Plants - 500; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR