GT8260

CSHL Arabidopsis genetrap mutant lines

Original: GT8260

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8260

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 524371 [Map]; Strand: w
      • AT4G01250.1 - [+] show detail - WRKY family transcription factor
        Distance: -155; Region: promoter
    Flanking Genome Sequence: GT8260 - 3-prime edge 
    GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGGAA TAATTACAAT 
    GTAACAAAAA GAGAGAAGAA AACAAAATTG TATATTATAC TGTATTTGAA 
    TCATAAATAA TAATTTAATA AAATCTTTCC TCCATTTTTT TCAACCCTTT 
    TTTAATTTTC GTCCATCTTC ACTCTCTTTA TAAACATATC TCTCTACCCT 
    TCAAAAGTCA GCGCTCTCTT TTGTCTCCTC TGCTTTTTTC TCTTCTCTCC 
    TCAGAGATTC GAAGCTTTTT GTCTCCCCTG AGTAACCAAA TTCAATGGCC 
    GACGATTGGG ATCTCCACGC CGTAGTCAGA GGCTGCTCAG CCGTAAGCTC 
    ATCAGCTACT ACCACCGTAT ATTCCCCCG

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT8260 - 3-prime edge 
    CCCCCCCCCC CCCCTCCCCC CCCCCTTCCC CCCCCCCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 524466 [Map]; Strand: w
      • AT4G01250.1 - [+] show detail - WRKY family transcription factor
        Distance: -250; Region: promoter
    Flanking Genome Sequence: GT8260 - 5-prime edge 
    AACTTATTGC TTTGAATGGA TGTTGTAGTT AATACGGAAT AATCCGTCAG 
    CCATACAGTG TATACTATTT TTTGAGACGA ATATGTTGTG GTTAGTGCGA 
    ACTAATCCGT CAACGGTCCA ATCTATACTA TTTTTTAGGA CAGATAACAA 
    ACTGTTGCAA ACTTAGTTTA AAGTCAATCC GCATCAGATT TATTTGTTTT 
    TTTGGTTCTG CATCATTACG AACTATAGAT TGTGAATGGT AAATAAAAAG 
    TGGTCCGGTT TGTAGATGGT TTTGTCCGCT TGGATCGCTG TAACCATTCA 
    AAGTTTATCT CCCAAAAATT AGTTTATTAG TTGAAAATAT TAATAGACAT 
    GAATTTATAA GTTACAAAAA AAGACCTGAA AATATTTTGT TGAGTCACAC 
    AACTTGTGAC TATAAAATAT ATTTAACTAA AAATAAAATT TGTGTACGGA 
    TGGTGTAAAC ATACTGAATA ATTTTTGTAT ATAAAACAGG AAATGAAGAA 
    GGACATGTGA CGATTGCACA AAATTAATAC TAGATGTTGT AATTAGCAAA 
    CTAATAGGAA TCGTCCTCTA TAAACCGATG TCA

AT4G01250.1

Model type
Protein coding
Short Description
WRKY family transcription factor
Curator Summary
member of WRKY Transcription Factor; Group II-e
Computational Description
WRKY22; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G23550.1); Has 3274 Blast hits to 2836 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 3256; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR