GT8359

CSHL Arabidopsis genetrap mutant lines

Original: GT8359

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT8359

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21950762 [Map]; Strand: w
      • AT3G59410.2 - [+] show detail - protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G59410.1 - [+] show detail - protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8359 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACAAATCA TCAAAAACCC 
    TAAATCTNAC ATTGCCTAAA TAACTCGTTT CACAAAATCC ACAGAAATTA 
    AAAGTTCAAA CTTACAGAGC AGTGATCTCC TCAGATAGAA GTTCATTATC 
    TTCATCAGCA TTAGATCCAT GGTCTTTCAG CTGACCCCTT CTTCCGCTAC 
    CTCCTCGTTT CTTCTTTTTC TTCGACCTGC TGCGACCCAT TTCCTCAGCC 
    CCAAAACACG CCTTAATCAA TCTGCTCTTT CAATCAAACA CCTTATCCTC 
    CGATCGAAGA ATCACCACAA TCTACCAAAA CCCAACTCCT TATAACAAGT 
    TCTTCGTCAA TCGCCACCGT TTCTCACAAC TCCCGCCAAA CAGTTTCGAT 
    CTAAGAATTT CAAAAAATGG CGACGGTGAC TGCCAGCACT AACAAAACCT 
    TCGATTACTT TTCTCTACTT GATCCCGGCG TAAAGAATTT TGAAAAATCG 
    CTCTCAGTGA TTGTTTTATA TAAGTCTCAA TGACGAAAAA ATCATCGACG 
    GCTCTTCTTC AAAGATGGCG CCATCAGAGT TCTATGTTGA TCCTGTCCAG 
    CACAAACATT CAAAACGCCG TCGTATTTGT ATCAAATGAT AATGGGCCTA 
    TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21950850 [Map]; Strand: w
      • AT3G59410.2 - [+] show detail - protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G59410.1 - [+] show detail - protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8359 - 5-prime edge 
    TTGTGGTTAA TTTTTGATTT GGAGGGGCAT GATAGAAGTT GCTATGACCT 
    TTAAGTTGTG CTGTGATTAG AAATTGTGTA AATGTTGGGA TTATGGGATT 
    TGATCGTTCA GATGTTACAG GNGAAAAACA ATAGCAATTA TTTGTAAATG 
    TTGTTAAAGA CGAGCAGTTT TAATTTACAC CACAATGAAA TCAGGAAAAG 
    AATGAGTCTC TATATGAATT CTAATAGTAA GAACTAAGAA GTATCGGTTT 
    TTGTTTTCAT GTTATCAGCT CTGCAATATT TCAAGAGGAC TGCAAAGTTG 
    TTTCTGATTC GCGTTCGCCT CCGCAAATAG CAATCAAGCT CAGGTTTTCT 
    TCTGATCAAC ATGTTTGCAT TCAAGTTTAG CTGTTGTGAT TTTTCTTTTT 
    TGTGCATGTA AATGCGTCTG ATTCACCAAG GTCCTTGTAA TTCGAGTAGG 
    CCGTACTCAA AGGACATGGG ATATGAAGAC ACCGACATAT CTGCTATGCT 
    TATAGTTAGG TGAGTATCTT CTTTCCGAAA TTATGAAATA ATTAACATGT 
    TCATCTTTTT ATTACTTC

AT3G59410.1

Model type
Protein coding
Short Description
protein kinase family protein
Computational Description
GCN2; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, translation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Anticodon-binding (InterPro:IPR004154), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G02760.1); Has 102900 Blast hits to 101457 proteins in 4494 species: Archae - 105; Bacteria - 12314; Metazoa - 36099; Fungi - 10698; Plants - 26119; Viruses - 326; Other Eukaryotes - 17239 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59410.2

Model type
Protein coding
Short Description
protein kinase family protein
Computational Description
GCN2; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, translation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Anticodon-binding (InterPro:IPR004154), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G02760.1).
Link
InterPro Scan - TAIR