GT84

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

small plants

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: GT84

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 26694950 [Map]; Strand: c
  - AT1G70770.1 - [+] show detail - Protein of unknown function DUF2359, transmembrane
    Distance: -3673; Region: intergenic
  - AT1G70780.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: 216; Region: intergenic
Flanking Genome Sequence: GT84 - 3-prime edge
```
GTTGGTACGG AACTTGTGTA GTAGTTTTAG TTGTTTATCA TCATTCATTT 
GTACTTTCTT CTATTT
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 17205589 [Map]; Strand: c
  - AT2G41260.2 - [+] show detail - glycine-rich protein / late embryogenesis abundant protein (M17)
    Distance: -921; Region: promoter
  - AT2G41260.1 - [+] show detail - glycine-rich protein / late embryogenesis abundant protein (M17)
    Distance: -925; Region: promoter
Flanking Genome Sequence: GT84 - 3-prime edge
```
CTACAGTATG TTGTCCACAA CTTCGCAAAC ATACTTTTAA ATAAGAGTCT 
ACATATGGTA CTGTCAACTG GACTAGGT
```
5 prime edge [+] show sequence
1. Chromosome: 2; Position: 17205335 [Map]; Strand: c
  - AT2G41250.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Distance: -2717; Region: intergenic
  - AT2G41260.2 - [+] show detail - glycine-rich protein / late embryogenesis abundant protein (M17)
    Distance: -1175; Region: intergenic
Flanking Genome Sequence: GT84 - 5-prime edge
```
TATACTAATA CTTGACTGTT ATTATATACT CACAATTGTC GTCAAAAAAG 
TTATAATAAC TAAAATAAAA AACTACATAT GGTACTGTCA ACTGGACTAG
```

AT1G70770.1

Model type: Protein coding
Short Description: Protein of unknown function DUF2359, transmembrane
Computational Description: Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum, nucleus, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G23170.2); Has 190 Blast hits to 170 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 3; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G70780.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G41250.1

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G14310.1); Has 5345 Blast hits to 5345 proteins in 1611 species: Archae - 258; Bacteria - 4323; Metazoa - 249; Fungi - 67; Plants - 142; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G41260.1

Model type: Protein coding
Short Description: glycine-rich protein / late embryogenesis abundant protein (M17)
Curator Summary: Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.
Computational Description: M17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein (M10) / LEA protein M10 (TAIR:AT2G41280.1); Has 3422 Blast hits to 2401 proteins in 322 species: Archae - 2; Bacteria - 405; Metazoa - 1403; Fungi - 273; Plants - 1003; Viruses - 37; Other Eukaryotes - 299 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G41260.2

Model type: Protein coding
Short Description: glycine-rich protein / late embryogenesis abundant protein (M17)
Curator Summary: Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.
Computational Description: M17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein (M10) / LEA protein M10 (TAIR:AT2G41280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR