GT8444

CSHL Arabidopsis genetrap mutant lines

Original: GT8444

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8444

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 126410 [Map]; Strand: w
      • AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
        Distance: -819; Region: promoter
      • AT4G00300.1 - [+] show detail - fringe-related protein
        Distance: -99; Region: promoter
    Flanking Genome Sequence: GT8444 - 3-prime edge 
    TACTGTCACA GTGGTGGTGT TGGTGAGATT GAAGGCTTTT TATTAAGAAA 
    TGAAACCAAG TTTTTTTTTT TTAAATCCCA ATTTTAACCG GTTTTTTTAA 
    AGCCCAAAAG GGCAGGGTTG GCCTCAAGCC TGCAAATGGT AATTTCCCTT 
    TTAAAATTTT TCCCCCTCCC CCGGAAATTT TATTTAAACC CCCTTACCCC 
    AATTTAAAAC CAAAATTTTT TTGGGGGGGG TCAAAAAAAA TCTTTTTTAT 
    TAAAAAAAAA TTTTGGGTTT TAAAAAAAAA TCCCTTTTTT TTTTTCCCCA 
    TTTTTTTA

AT4G00290.1

Model type
Protein coding
Short Description
Mechanosensitive ion channel protein
Computational Description
Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00300.1

Model type
Protein coding
Short Description
fringe-related protein
Computational Description
fringe-related protein; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT1G01570.1); Has 958 Blast hits to 946 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 151; Plants - 707; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR