GT8447

CSHL Arabidopsis genetrap mutant lines

Original: GT8447

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT8447

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958365 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -66; Region: promoter
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -536; Region: promoter
    Flanking Genome Sequence: GT8447 - 3-prime edge
    TAGATCAATT ATGTGATCAT ATTTAAAAAT ACGATCCGGT TTTTAAGGGA 
    TTTGAACGGA TCAAATGTGT TTCCGGTTCG GTTATATAAA CCGGTATTTT
    ACCATATCCA ACCGAAATGA GTATCGACGG GAATTATCCG TAAACAGAGT
    GACAGTGAGG TGTGAAGGAA GAAGACGATG GCGTCAATGT CTCTCTCGTT
    TTCTTCTTCG CTATGTTCAT CCAGAATCCC CGAAGGTAAG CGTAGGTTTC
    GTCACAGAGA TGTGGGCATC GTTAGATGCG TTTTGGCTGC TTCGAAATCT
    TCTCCGGGAA GTGTTACGAA GAAGAGGCTT TGGAAAGACG GCGAATTCCC
    CGGAATCACG GAGCCGGTTA ATCAGAGAAG AACTCCGATA AAGAATGTGA
    AGAAGAAACT TGACAGGAGA AGCAAAGCTA ACGGATGGGT TAACACCGTC
    ACTGAAACTT TGTCCGATCT CATCGCCAAA AAGCA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5149402 [Map]; Strand: w
      • AT1G14920.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT8447 - 5-prime edge
    CTTCACCTTC CCAAATAAAG CAAAACCTAG ATCCGACATT GAAGGAAAAA 
    CCTTTTAGAT TCATCTCTGT ACAACAACCC AACCATGAAG AGAGATCATC
    ATCATCATCA TCAAGATAAG AAGACTATGA TGATGAATGA AGAAGACGAC
    GGTAACGGCA TGGATGAGCT TCTAGCTGTT CTTGGTTACA AGGTTAGGTC
    ATCGGAAATG GCTGATGTTG CTCAGAAACT CGAGCAGCTT GAAGTTATGA
    TGTCTAATGT TCAAGAAGAC GATCTTTCTC AACTCGCTAC TGAGACTGTT
    CACTATAATC CGGCGGAGCT TTACACGTGG CTTGATTCTA TGCTCACCGA
    CCTTAATCCT CCGTCGTCTA ACGCCGAGTA CGATCTTAAA GCTATTCCCG
    GTGACGCGAT TCTCAATCAG TTCGCTATCG ATTCGGCTTC TTCGTCTAAC
    CAAGGCGGCG GAGGAGATAC GTATACTACA AACAAGCGGT TGAAATGCTC
    AAACGGCGTC GTGGAAACCA CCACAGCGAC GGCTGAGTCA ACTCGGCATG

AT1G14920.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.
Computational Description
GIBBERELLIC ACID INSENSITIVE (GAI); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT2G01570.1); Has 2718 Blast hits to 2657 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR