GT8454

CSHL Arabidopsis genetrap mutant lines

Original: GT8454

Phenotypes

Morphological phenotypes

Original description

  • small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT8454

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3102827 [Map]; Strand: w
      • AT3G10060.1 - [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT8454 - 3-prime edge 
    TGGGGAGAGT CGTGAAATCG CTTTCCGGTA ACTTGGATGC ACGTAGCTGC 
    AGAGAATTGT ATGTAAGAGA TTGAGTTTTG AGTCAAGAAC ACAATGTATG 
    CATAGATATA TATATTGCTT ACAGCTCTTC TACTGGTGCT TACTGCCTCG 
    GCTGAACCAG TTGACAAAAT CCCAGAAGCT GTGTGGAGTC AGATAACAAC 
    ATTTTCTAAG GATTTTGATA CACTGAGCTT AAGTGGAGAT GTGAAGAACT 
    AATAGAGAAT GATCTAACCT GTAGCGAGAA GACATCCAAG TAAGACCCTT 
    CTCCCTTCAC AACTCACCGG CGCCGGAGGC AGGACAGTCT CTGTTCTGAT 
    GACCTTTTCG CAGCCGGGAG AAGGTAACGA GCACCGGTAC GGTTTGGATT 
    GCCTTTTTCC TGCAAATTAT AACAAATCCA AAAAAAAAAC AATTTTTGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3102963 [Map]; Strand: w
      • AT3G10060.1 - [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT8454 - 5-prime edge 
    CCGTAATCCA ATGCATCATC TTTTGTTTGA ATTCGATACA GTACTCATAC 
    CGCAAANACA GGATTGAAAA ATCAAGTCTT TCTCGCAATA ATCACAAGTT 
    TGGTTTCTGT TTATATTGTT GCAGGTACTA TGATATAAAG GTTGGCAATG 
    GAGCAGAGGC TGTGAAAGGA TCTCGGGTCG CAGTACGGTT GTGAATACGT 
    TTCCTGGTTT ACTTTGGACA TGTAAATGCT AACAGTTTTA ACAAGCGTTG 
    ATGCTTAACC CAAATGTTGT GTCGCAGGTT CACTATGTTG CAAAATGGAA 
    AGGGATAACG TTCAT

AT3G10060.1

Model type
Protein coding
Short Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G20810.1); Has 8406 Blast hits to 7908 proteins in 1571 species: Archae - 44; Bacteria - 4267; Metazoa - 1616; Fungi - 433; Plants - 872; Viruses - 0; Other Eukaryotes - 1174 (source: NCBI BLink).
Link
InterPro Scan - TAIR