GT8462

CSHL Arabidopsis genetrap mutant lines

Original: GT8462

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT8462

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15399092 [Map]; Strand: w
      • AT4G31820.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: -4662; Region: intergenic
      • AT4G31830.1 - [+] show detail - unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; ...
        Distance: 1512; Region: intergenic
    Flanking Genome Sequence: GT8462 - 3-prime edge 
    TAGAATTGGA CCCATAGTCA GTGTTCACCA TCATTTGTTT ATGATGCCTT 
    ATGCTCACGC CTGTCTATAA TTATCTTTCT ATTATTTTTC AACATTAAAC 
    CTTTACTATT AGTCGTTTGA CGTTAAACA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15399091 [Map]; Strand: w
      • AT4G31820.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: -4661; Region: intergenic
      • AT4G31830.1 - [+] show detail - unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; ...
        Distance: 1513; Region: intergenic
    Flanking Genome Sequence: GT8462 - 3-prime edge 
    TAGATTGGAC CCATAGTCAG TGTTCACCAT CATTTGTTTA TGATGCCTTA 
    TGCTCACGCC TGTCTATAAT TATCTTTCTA TTATTTTTCA ACATTAAACC 
    TTTACTATTA GTCGTTTGAC GTTAAACATT CATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20743411 [Map]; Strand: c
      • AT5G51000.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT8462 - 3-prime edge 
    TATAAGCCAT CACAATGAAA CACACTATCT ATGTCGACTT GATTAAGTTT 
    ACCTATTTGC TTTATAGATG GATCTGCCAA GTCTTTGTGA TTATGGAGAT 
    TGACGCTCAT TAAACAAGCC TTTAAATCAC ATATCATGAT CACCTGAATC 
    TCCTTGGCTT CTTTACCATA ATGGTTTTTT GTAAAGCTCG GATCTTTGGA 
    TAAATCATTC CATTGTTTAC AAGTTAATTT CACTGCTTTC AAAGATGTTA 
    TTGGAACCCT AGAGAGTATC TCTTCTACCA AATCCGGGAA AAGATCAGAC 
    ATCGTCGACA TTTTTTCAAA TAGAGATTAG GGTTTTCTAC TTTCACGCTT 
    GCCCACACTA CTTTTTTTTT GGTTAATTTT TCCAGAAAAA AAAATTGGGG 
    AAAAAAAAAA A

AT4G31820.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Curator Summary
A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development.
Computational Description
ENHANCER OF PINOID (ENP); FUNCTIONS IN: signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: late endosome, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67440.1); Has 898 Blast hits to 870 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31830.1

Model type
Protein coding
Computational Description
unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51000.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19560.1); Has 1178 Blast hits to 1122 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR